AT3G24040.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 14 (InterPro:IPR003406), Core-2/I-Branching enzyme (InterPro:IPR021141); BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (TAIR:AT5G39990.1); Has 634 Blast hits to 633 proteins in 99 species: Archae - 0; Bacteria - 13; Metazoa - 278; Fungi - 0; Plants - 316; Viruses - 14; Other Eukaryotes - 13 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:8681118..8683211 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47198.10 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.36 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.30 | ||||||||||||||||||||||||||||||||
| Length | 417 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQHTPEQPRV TLYIILTTAF LSLCFLLSLS SSSQYSSSSY TGRPDDLRPD PRLFPSSSKI AADTAPPSIA YLISGSSGDT RRILRLLYAT YHPRNRYLLH 101: LDSLATQSER DRLAVDVQDV PIFRAARNVD VIGKPDFAYQ RGSSPMASTL HGASILLRLS GTWDWFVSIS VDDYPLVTQD ELLHIMSHLP KDLNFVNHTS 201: YIGWKESRKL KPVIVDPGLY LVEKTDMFFA SQKRELPKAF KLFSGPSFSI LSRNFMEHCV LGTDNFPRTL LMYLSNTPDS LSNYFPTILC NTDTFKKTIM 301: NNNLLYLASN DTSKERYHQL DHKEFTEMVD SGAAFARGFR YDDTVLDRID HELLGRKPGE VVPGGWCLGD SSKNRSSCSV WGDSGILRPG SGSDRLERRI 401: VELLSNDWFR LHQCVPE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)