AT3G19680.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF1005) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF1005); LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1005 (InterPro:IPR010410); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1005) (TAIR:AT1G50040.1); Has 782 Blast hits to 189 proteins in 38 species: Archae - 0; Bacteria - 22; Metazoa - 12; Fungi - 23; Plants - 137; Viruses - 0; Other Eukaryotes - 588 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:6840448..6842107 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51964.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.55 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||
| Length | 491 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDPCSFVRII VGNLAVRFPS SSSSSSSSSG PSVSGINPTA PNCYCKIRFK NFPREIVSVP VMFRTESESE TRCSSSGNVS TVAACFSLSK AQIEASLKKP 101: KFSVLSVEAY SRGNSDGDDG VSGASCGLAT AGEKLLGRFE VSLDLKSAET KSFLAHNGWV ALPSKKTKSK TGSDPELHVS VRVEPDPRFV FQFDGEPECS 201: PQVFQVQGNT KQAVFTCKFG SRNSNSGDRN LLHSSSMMSE ISSTRSCISS MNSEKEQPSK ERKGWSITVH DLSGSPVAMA SMVTPFVPSP GSNRVTRSSP 301: GAWLILRPDG CTWKPWGRLE AWREAGYSDT LGYRFELFQD GIATAVSASS SISLKNGGSF VIDVTGGTST TASTPTTSPQ GSWDLGSGSS AGSRPASRPG 401: SGSGSDFGYL LPQHPSAAAQ NRGFVMSATV EGVGKRSKPE VEVGVTHVTC TEDAAAHVAL AAAVDLSLDA CRLFSHKLRK ELRQQSQLGV V |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)