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AT3G15355.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.830
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ubiquitin-conjugating enzyme 25
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ubiquitin-conjugating enzyme 25 (UBC25); FUNCTIONS IN: small conjugating protein ligase activity; INVOLVED IN: regulation of protein metabolic process, post-translational protein modification; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: Ubiquitin-conjugating enzyme family protein (TAIR:AT1G53025.1); Has 6168 Blast hits to 6144 proteins in 365 species: Archae - 0; Bacteria - 0; Metazoa - 2619; Fungi - 1243; Plants - 1332; Viruses - 17; Other Eukaryotes - 957 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G15355-MONOMEREC:2.3.2.23eggNOG:ENOG410XP8CeggNOG:KOG0895
EMBL:AB022218EMBL:AC024081EMBL:AF361806EMBL:AP000413
EMBL:AY059155EMBL:CP002686EMBL:DQ027038EnsemblPlants:AT3G15355
EnsemblPlants:AT3G15355.1entrez:820772Gene3D:3.10.110.10GeneID:820772
Genevisible:Q9LUQ5GO:GO:0005524GO:GO:0005737GO:GO:0031625
GO:GO:0061630Gramene:AT3G15355.1hmmpanther:PTHR24067hmmpanther:PTHR24067:SF100
HOGENOM:HOG000237682InParanoid:Q9LUQ5InterPro:IPR000608InterPro:IPR016135
KEGG:ath:AT3G15355KO:K10581OMA:FKRFDIVPaxDb:Q9LUQ5
Pfam:PF00179Pfam:Q9LUQ5Pfscan:PS50127PhylomeDB:Q9LUQ5
PRIDE:Q9LUQ5PRO:PR:Q9LUQ5PROSITE:PS50127ProteinModelPortal:Q9LUQ5
Proteomes:UP000006548RefSeq:NP_188154.1SMR:Q9LUQ5STRING:3702.AT3G15355.1
SUPFAM:SSF54495TAIR:AT3G15355tair10-symbols:PFU1tair10-symbols:UBC25
UniGene:At.27040UniGene:At.67741UniPathway:UPA00143UniProt:Q9LUQ5
Coordinates (TAIR10) chr3:+:5183858..5186669
Molecular Weight (calculated) 67772.70 Da
IEP (calculated) 4.65
GRAVY (calculated) -0.58
Length 609 amino acids
Sequence (TAIR10)
(BLAST)
001: MEPNVVEIAT PPAASCSRIR TPTKAETPEV IDVEEYDLQN GGVPNGNNVD YKNKGKAIDF DSMSYGDYGE EDEYAVGSPG DDYGYPESSP LSNSLLDPES
101: LIYEDDENYS EQYDFEMEAE PDNYSMYQDL FDGKDIPTGV EVSMDWFPNS ADKESASSSK SSHANNGNNS SKKATKASGI HSQFSSDMET PVAQPWNALP
201: HKAEGVIPNS AYALPQNSKA FQPPYAVHYS ALKTAFSNYL QPQTPDTVLG EAPAPAAGSS GLLPPNTPGF KSNAARFKEE PPILPPDDSR VKRNMEDYLG
301: LYLFFKRFDI VEDFSDHHYA SKGTTSKQHS KDWAKRIQDE WRILEKDLPE MIFVRAYESR MDLLRAVIIG AQGTPYHDGL FFFDIFFPDT YPSTPPIVHY
401: HSGGLRINPN LYNCGKVCLS LLGTWSGNQR EKWIPNTSTM LQVLVSIQGL ILNQKPYFNE PGYERSAGSA HGESTSKAYS ENTFILSLKT MVYTMRRPPK
501: YFEDFAYGHF FSCAHDVLKA CNAYRNGATP GYLVKGAPDV EENSAGMSSL KFRTDVATFV ETVLLKEFIL LGVLGLEPEE EEKTPETIIV AESSKCTRSR
601: SKRDRVSSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)