AT3G11650.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : NDR1/HIN1-like 2 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus and spermine. Overexpression of the gene induces the expression of PR-1 gene and shows light-dependent 'speck disease-like' symptom on leaves. The gene product is localized to the chloroplast | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
NDR1/HIN1-like 2 (NHL2); CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: NDR1/HIN1-like 3 (TAIR:AT5G06320.1); Has 1008 Blast hits to 1007 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1008; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:3676264..3676986 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 26766.30 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.01 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.04 | ||||||||||||||||||||||||||||||||
| Length | 240 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGSKQPYLNG AYYGPSIPPP PKAHRSYNSP GFGCCCFSCL GSCLRCCGCC ILSLICNILI AVAVILGVAA LILWLIFRPN AVKFYVADAN LNRFSFDPNN 101: NLHYSLDLNF TIRNPNQRVG VYYDEFSVSG YYGDQRFGSA NVSSFYQGHK NTTVILTKIE GQNLVVLGDG ARTDLKDDEK SGIYRINAKL RLSVRFKFWF 201: IKSWKLKPKI KCDDLKIPLG SSNSTGGFKF QPVQCDFDLS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)