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AT3G10720.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant invertase/pectin methylesterase inhibitor superfamily
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT5G04970.1); Has 2403 Blast hits to 2363 proteins in 309 species: Archae - 6; Bacteria - 557; Metazoa - 1; Fungi - 195; Plants - 1619; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT3G10720EnsemblPlants:AT3G10720.1entrez:820241gramene_pathway:3.1.1.11gramene_pathway:PWY-1081hmmpanther:PTHR31707hmmpanther:PTHR31707:SF21
KEGG:00040+3.1.1.11KEGG:00500+3.1.1.11Pfam:PF01095scanprosite:PS00503unipathway:UPA00545
Coordinates (TAIR10) chr3:-:3354639..3355750
Molecular Weight (calculated) 29518.90 Da
IEP (calculated) 6.50
GRAVY (calculated) -0.24
Length 263 amino acids
Sequence (TAIR10)
(BLAST)
001: MLMGDGINKT IITGNHNVVD GWTTYNCSSF AVVGERFMAV DVTFRNTAGP EKHQAVALRN NAEGSSFYRC SFEGYQDTLY VHSLRQFYRE CDIYGTVDFI
101: FGNAAAIFQN CNIYARKPMA KQKNAITAHG RLDPNQNTGI SIINCTIKAA PDLAAEPKSA MTFLGRPWKP YSRTVFMQSY ISDIVQPVGW LEWNGTIGLD
201: TIYYGEYSNF GPGANTNQRV QWLGYNLLNL AEAMNFTVYN FTMGDTWLPQ TDIPFYGGLL SKE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)