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AT3G07550.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.859
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RNI-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNI-like superfamily protein; BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT5G23340.1); Has 6516 Blast hits to 2862 proteins in 227 species: Archae - 0; Bacteria - 210; Metazoa - 2727; Fungi - 707; Plants - 2248; Viruses - 0; Other Eukaryotes - 624 (source: NCBI BLink).
Protein Annotations
BioGrid:5279eggNOG:ENOG410XQ54eggNOG:KOG1947EMBL:AC009853
EMBL:AK118929EMBL:BT008530EMBL:CP002686EnsemblPlants:AT3G07550
EnsemblPlants:AT3G07550.1EnsemblPlants:AT3G07550.2entrez:819944Gene3D:3.80.10.10
GeneID:819944Genevisible:Q9SRR1Gramene:AT3G07550.1Gramene:AT3G07550.2
hmmpanther:PTHR24006HOGENOM:HOG000243751InParanoid:Q9SRR1IntAct:Q9SRR1
InterPro:IPR001611InterPro:IPR001810InterPro:IPR006553InterPro:IPR032675
KEGG:ath:AT3G07550OMA:WNLAVCHPaxDb:Q9SRR1Pfam:PF13516
Pfam:Q9SRR1PhylomeDB:Q9SRR1PRIDE:Q9SRR1PRO:PR:Q9SRR1
ProteinModelPortal:Q9SRR1Proteomes:UP000006548RefSeq:NP_566312.1RefSeq:NP_850534.1
SMART:SM00367SMR:Q9SRR1STRING:3702.AT3G07550.1SUPFAM:SSF52047
SUPFAM:SSF81383TAIR:AT3G07550UniGene:At.18420UniGene:At.28242
UniProt:Q9SRR1
Coordinates (TAIR10) chr3:+:2409946..2411133
Molecular Weight (calculated) 43679.80 Da
IEP (calculated) 6.69
GRAVY (calculated) 0.07
Length 395 amino acids
Sequence (TAIR10)
(BLAST)
001: MEDVSESDNN VETSIIHLPD DCLSFIFQRL DSVADHDSFG LTCHRWLNIQ NISRRSLQFQ CSFSVLNPSS LSQTNPDVSS HHLHRLLTRF QWLEHLSLSG
101: CTVLNDSSLD SLRYPGARLH TLYLDCCFGI SDDGISTIAS FCPNLSVVSL YRCNISDIGL ETLARASLSL KCVNLSYCPL VSDFGIKALS QACLQLESVK
201: ISNCKSITGV GFSGCSPTLG YVDADSCQLE PKGITGIISG GGIEFLNISG VSCYIRKDGL VPIGSGIASK LRILNLRMCR TVGDESIEAI AKGCPLLQEW
301: NLALCHEVKI SGWEAVGKWC RNLKKLHVNR CRNLCDQGLL ALRCGCMNLQ ILYMNGNARL TPTAIEMFRL HRADITLRTE EMMVIGPDWR LYAQE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)