AT3G07400.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.946 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : lipase class 3 family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
lipase class 3 family protein; FUNCTIONS IN: triglyceride lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); Has 393 Blast hits to 389 proteins in 69 species: Archae - 0; Bacteria - 12; Metazoa - 12; Fungi - 52; Plants - 275; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:2367456..2372238 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 110865.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.05 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||||||||||
| Length | 1003 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MESIQSRVES WIRDQRARFL RVSWGPIQWR FRWPPWNGGD ADQRIKIRRE YEKRKKQIED LCLALKSESV EDLQDILCCM VLSECVYKRP ASEMVRAVNK 0101: FKADFGGQFI SLERVQPSSD HVPHRYLLAE AGDTLFASFV GTRQYKDIMA DANILQGHIF HDDVAEDECI EASEPIQSEP LKNNGEGLRN PKQLRQKPKP 0201: AAHRGFLARA KGIPALELYR LAQKKKRKLV LCGHSLGGAV AALATLAILR VVAASSKRGN ENIHVKCITF SQPPVGNAAL RDYVHEKGWH HYFKSYCIPE 0301: DLVPRILSPA YFHHYNEQRI SMAGETEATN GQGVTSEAEK RKTKEHEQLV IGVGPVQNSF WRLSKLVPLE AVKKQLDRYI GKKEDPAETS TANESAVLAP 0401: IRDVVIEPQS LEIEEGKDGI SLKPLPDAGN GPTVSGRSGG KTNSPNGFRV PYLPSYVPFG ELYLLGTASV ESLSEGEYSK LTSVRSVITE LRERLQSHSM 0501: KSYRSRFQRI HDLCMDVDGF FGVDQQKQFP HLQQWLGLAV GGSIELGHIV ESPVIRTATS IAPLGWKGVP GDKNAELLKV DITGFGLHLC SFVHAQVNGN 0601: WCSTTVESFP TTPAYSSDNV EQTELQKIRV VIGAPLKRPP SNQIVEDPLV PMFSSVDSKT GFPKEGINLG FFQEDKFVRP EGLEDLYIFC TSDFATVAKE 0701: VEVRTRRVRL LGLEGAGKTS LFRAILGQSM LSSMTHVENL QIQSDVQECI IGGVCYSDTV GVNLQELHLE ASRFREELWK GVRNLSKKID LIILVHNLSH 0801: RIPRYQNSTT LLQQQQPALA LLLDEVKSLG IPWVLAITNK FSVSAHQQKS AIEAVLQAYQ ASPNTTGIVN SIPYIISGSG TSSLPWAAVN AGNDGSVGVP 0901: KMIFAPLDLV KKPFQRKDTV FPVDGVNSLC ELVHRVLQTQ EEACFEELAR DRLLVELAKD RVVDGSQAKS SSMSAAAVGA SLGAGLGLVL AVVMGAGSAL 1001: RKP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)