AT3G04820.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Pseudouridine synthase family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase, TruD (InterPro:IPR001656), Pseudouridine synthase TruD, eukaryotic (InterPro:IPR017091), Pseudouridine synthase, TruD, insertion domain (InterPro:IPR011760); Has 2276 Blast hits to 2198 proteins in 933 species: Archae - 260; Bacteria - 1262; Metazoa - 203; Fungi - 153; Plants - 61; Viruses - 0; Other Eukaryotes - 337 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:-:1321453..1325949 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 79406.10 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.96 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.46 | ||||||||||||||||||||||||||||||||||||||||
| Length | 715 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKLSRTVLSC LPSLLKPYSS LSWTTKIATI ATNFEGMKTV DEADVGISCF ISQLPGFRGI LKQRYADFIV NEVDMDGNVV HLTSLDLPPE MAVKEEDKAK 101: SCDNVPQNYT SAVESFKSIS SVTDAERLEI LINQVTSGTD GEVLPVVLDP SSDKSKRTAI HNFVKENFKF LVTDTVDGPD STSKCIRVRV NSGANNNRGN 201: RSKKRKERGD KPFDSRGSEH WPEHVGKFLR FHLYKENKDT QEALGLIGKM LGVQPKSFGF SGTKDKRSVS TQRVTVFKQQ ASKLAALNKR LFGIKVGDFC 301: NVKEGLLLGQ LMGNRFTITL RGVVADSEET IKQSAESLGK DGFINYFGLQ RFGSGSVPTH HVGAALLKGE WKDAVDMILD PRETERHVVN DAREYYKETG 401: DIDGTLRQLP RYLVAERAIL QCLKKCPGNY LQALKGIPRT LRMMYVHSYQ SYLWNNAASL RVKNYGTSQV VLGDLVSTKV DAAKRMVDSL TSEHNESSEE 501: ALDCDQVDDT AVVDLPAERS DLVKVVSIED LEAGTYSTSD IVLPLPGSRV IYPSNDIAEI YHDLAKKDGI SLTESIHGVK EFSITSMTGG YRRVFQKPID 601: FEWELLTYTD SNKPLAETDL DRIPMNKPVE KVGSTEEIED ESMKSDTNPH DSGETNLKDQ TDSNEAEKDT GNPDSEQTQM ALKMALTLPS SCYATMAIRE 701: LLKTSTSVAY HKTLN |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)