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AT3G04820.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 0.912
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pseudouridine synthase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase, TruD (InterPro:IPR001656), Pseudouridine synthase TruD, eukaryotic (InterPro:IPR017091), Pseudouridine synthase, TruD, insertion domain (InterPro:IPR011760); Has 2276 Blast hits to 2198 proteins in 933 species: Archae - 260; Bacteria - 1262; Metazoa - 203; Fungi - 153; Plants - 61; Viruses - 0; Other Eukaryotes - 337 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0585eggNOG:KOG2339EMBL:AY735600EMBL:AY954844EMBL:CP002686EnsemblPlants:AT3G04820EnsemblPlants:AT3G04820.1
entrez:819642GeneID:819642GO:GO:0001522GO:GO:0003723GO:GO:0009982Gramene:AT3G04820.1hmmpanther:PTHR13326
hmmpanther:PTHR13326:SF8HOGENOM:HOG000203484InterPro:IPR001656InterPro:IPR011760InterPro:IPR020103KEGG:ath:AT3G04820KO:K06176
ncoils:CoilOMA:RRNHHSGPANTHER:PTHR13326Pfam:PF01142Pfscan:PS50984PhylomeDB:Q5XVC2PROSITE:PS50984
Proteomes:UP000006548RefSeq:NP_187133.3SMR:Q5XVC2STRING:3702.AT3G04820.1SUPFAM:SSF55120TAIR:AT3G04820TIGRfam:TIGR00094
TIGRFAMs:TIGR00094UniGene:At.17651UniGene:At.50988UniProt:Q5XVC2
Coordinates (TAIR10) chr3:-:1321453..1325949
Molecular Weight (calculated) 79406.10 Da
IEP (calculated) 5.96
GRAVY (calculated) -0.46
Length 715 amino acids
Sequence (TAIR10)
(BLAST)
001: MKLSRTVLSC LPSLLKPYSS LSWTTKIATI ATNFEGMKTV DEADVGISCF ISQLPGFRGI LKQRYADFIV NEVDMDGNVV HLTSLDLPPE MAVKEEDKAK
101: SCDNVPQNYT SAVESFKSIS SVTDAERLEI LINQVTSGTD GEVLPVVLDP SSDKSKRTAI HNFVKENFKF LVTDTVDGPD STSKCIRVRV NSGANNNRGN
201: RSKKRKERGD KPFDSRGSEH WPEHVGKFLR FHLYKENKDT QEALGLIGKM LGVQPKSFGF SGTKDKRSVS TQRVTVFKQQ ASKLAALNKR LFGIKVGDFC
301: NVKEGLLLGQ LMGNRFTITL RGVVADSEET IKQSAESLGK DGFINYFGLQ RFGSGSVPTH HVGAALLKGE WKDAVDMILD PRETERHVVN DAREYYKETG
401: DIDGTLRQLP RYLVAERAIL QCLKKCPGNY LQALKGIPRT LRMMYVHSYQ SYLWNNAASL RVKNYGTSQV VLGDLVSTKV DAAKRMVDSL TSEHNESSEE
501: ALDCDQVDDT AVVDLPAERS DLVKVVSIED LEAGTYSTSD IVLPLPGSRV IYPSNDIAEI YHDLAKKDGI SLTESIHGVK EFSITSMTGG YRRVFQKPID
601: FEWELLTYTD SNKPLAETDL DRIPMNKPVE KVGSTEEIED ESMKSDTNPH DSGETNLKDQ TDSNEAEKDT GNPDSEQTQM ALKMALTLPS SCYATMAIRE
701: LLKTSTSVAY HKTLN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)