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AT2G40935.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.727
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PLAC8 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PLAC8 family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: PLAC8 family protein (TAIR:AT3G18470.1); Has 865 Blast hits to 864 proteins in 99 species: Archae - 0; Bacteria - 0; Metazoa - 128; Fungi - 94; Plants - 626; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IW5UeggNOG:ENOG410XX4JEMBL:AC002409EMBL:AK228174EMBL:AY085101EMBL:BT029441EMBL:CP002685
EnsemblPlants:AT2G40935EnsemblPlants:AT2G40935.1entrez:818692GeneID:818692Genevisible:Q8S8T8GO:GO:0016021hmmpanther:PTHR15907
hmmpanther:PTHR15907:SF39HOGENOM:HOG000237749InterPro:IPR006461KEGG:ath:AT2G40935OMA:MIHRAVCPaxDb:Q8S8T8Pfam:PF04749
Pfam:Q8S8T8PhylomeDB:Q8S8T8PRO:PR:Q8S8T8Proteomes:UP000006548RefSeq:NP_001118490.1RefSeq:NP_565945.1RefSeq:NP_850339.1
STRING:3702.AT2G40935.1TAIR:AT2G40935TIGRfam:TIGR01571TIGRFAMs:TIGR01571UniGene:At.66415UniProt:Q8S8T8
Coordinates (TAIR10) chr2:+:17083199..17084216
Molecular Weight (calculated) 20799.80 Da
IEP (calculated) 4.94
GRAVY (calculated) -0.03
Length 190 amino acids
Sequence (TAIR10)
(BLAST)
001: MKEKKGHYVP PSYIPLTQSD ADTEVETTTP NLEIAVSEST KDDPRQWSSG ICACFDDMQS CCVGLFCPCY IFGKNAELLG SGTFAGPCLT HCISWALVNT
101: ICCFATNGAL LGLPGCFVSC YACGYRKSLR AKYNLQEAPC GDFVTHFFCH LCAICQEYRE IREQSSGSYP LDMKMAITNA PLAQTMESAN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)