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AT4G01710.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ARP2/3 complex 16 kDa subunit (p16-Arc)
Curator
Summary (TAIR10)
belongs to the DIS(distorted) gene family. Encodes a actin polymerization factor. Involved in cell expansion of trichome.
Computational
Description (TAIR10)
CROOKED (CRK); CONTAINS InterPro DOMAIN/s: ARP2/3 complex 16kDa subunit (p16-Arc) (InterPro:IPR006789); BEST Arabidopsis thaliana protein match is: ARP2/3 complex 16 kDa subunit (p16-Arc) (TAIR:AT5G65274.1); Has 360 Blast hits to 360 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 256; Fungi - 50; Plants - 40; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Protein Annotations
BioGrid:13378eggNOG:ENOG4111FGVeggNOG:KOG3380EMBL:AF104919
EMBL:AL161492EMBL:AY052191EMBL:AY143806EMBL:CP002687
EnsemblPlants:AT4G01710EnsemblPlants:AT4G01710.1entrez:828087Gene3D:1.25.40.190
GeneID:828087Genevisible:Q9M117GO:GO:0005737GO:GO:0005885
GO:GO:0034314GO:GO:0042995Gramene:AT4G01710.1hmmpanther:PTHR12644
HOGENOM:HOG000243858InParanoid:Q9M117IntAct:Q9M117InterPro:IPR006789
KEGG:ath:AT4G01710KO:K05754ncoils:CoilOMA:CKSANWL
PANTHER:PTHR12644PaxDb:Q9M117Pfam:PF04699Pfam:Q9M117
PIR:A85022PRIDE:Q9M117PRO:PR:Q9M117ProteinModelPortal:Q9M117
Proteomes:UP000006548RefSeq:NP_567216.1SMR:Q9M117STRING:3702.AT4G01710.1
SUPFAM:0047762SUPFAM:SSF69103TAIR:AT4G01710tair10-symbols:ARPC5
tair10-symbols:CRKUniGene:At.26442UniProt:Q9M117
Coordinates (TAIR10) chr4:+:735776..736450
Molecular Weight (calculated) 14973.30 Da
IEP (calculated) 7.34
GRAVY (calculated) -0.25
Length 132 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEFVEADNA EAIIARIETK SRKIESLLKQ YKHVEALKTA LEGSPPKTRD ERCKSANWIV VHRALMAIKD IDGMLNALDV EYYDILMKYL YRGLSTGDRP
101: TCDQCLKIHE KLTERAGLGC ILRCLTDTIN TV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)