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AT2G32930.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : zinc finger nuclease 2
Curator
Summary (TAIR10)
Encodes a zinc finger protein.
Computational
Description (TAIR10)
zinc finger nuclease 2 (ZFN2); CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT1G04990.1); Has 1502 Blast hits to 1018 proteins in 167 species: Archae - 0; Bacteria - 2; Metazoa - 453; Fungi - 164; Plants - 727; Viruses - 0; Other Eukaryotes - 156 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5063eggNOG:KOG1677EMBL:AC003033EMBL:AF138744
EMBL:CP002685EnsemblPlants:AT2G32930EnsemblPlants:AT2G32930.1entrez:817855
ExpressionAtlas:O48772Gene3D:4.10.1000.10GeneID:817855Genevisible:O48772
GO:GO:0003677GO:GO:0005634GO:GO:0046872hmmpanther:PTHR12506
hmmpanther:PTHR12506:SF24HOGENOM:HOG000237733InParanoid:O48772InterPro:IPR000571
PaxDb:O48772Pfam:O48772Pfam:PF00642Pfscan:PS50103
PhylomeDB:O48772PIR:T01114PRIDE:O48772PRO:PR:O48772
PROSITE:PS50103ProteinModelPortal:O48772Proteomes:UP000006548RefSeq:NP_565758.1
SMART:SM00356SMR:O48772STRING:3702.AT2G32930.2SUPFAM:SSF90229
TAIR:AT2G32930tair10-symbols:ZFN2UniGene:At.11296UniProt:O48772
Coordinates (TAIR10) chr2:-:13965990..13968419
Molecular Weight (calculated) 49750.00 Da
IEP (calculated) 6.44
GRAVY (calculated) -0.76
Length 453 amino acids
Sequence (TAIR10)
(BLAST)
001: MSETQQQVQN STGSIRSPDK IEDTFRRMKV NEDNMEQSSP YPDRPGERDC QFFLRTGQCG YGNSCRYNHP LTNLPQGIIY YRDQLPERVG QPDCETGACK
101: YGPTCKYHHP KDRNGAGPVL FNVLGLPMRQ GEKPCPYYMQ TGLCRFGVAC KFHHPHPHSQ PSNGHSAYAM SSFPSVGFPY ASGMTMVSLP PATYGAIPRP
201: QVPQSQAYMP YMVAPSQGLL PPQGWATYMT ASNPIYNMKT QLDSSSSASV AVTVTSHHHS FSERAECRFF MNTGTCKYGD DCKYSHPKER LLQSPPTLLN
301: PIVLPARPGQ PACGNFKAYG FCKFGANCKF DHSMLLNPYN NTGLAMSSLP TPYPYAPPVS TNLRISSPPS PSDMTTLSNG KPAAAEAQSL ETEKQDDSPT
401: EPEKSEVEDS LPPNGSDSTS LPNDKPDAET EKQDDDSAEL DSSKVQDSSD KST
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)