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AT2G18850.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SET domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SET domain-containing protein; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214); BEST Arabidopsis thaliana protein match is: Rubisco methyltransferase family protein (TAIR:AT3G07670.1); Has 858 Blast hits to 854 proteins in 169 species: Archae - 0; Bacteria - 0; Metazoa - 224; Fungi - 205; Plants - 298; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGSFeggNOG:ENOG4111SVHEMBL:BT020357EMBL:CP002685
EnsemblPlants:AT2G18850EnsemblPlants:AT2G18850.1entrez:816400ExpressionAtlas:Q5PNU0
GeneID:816400Gramene:AT2G18850.1hmmpanther:PTHR13271hmmpanther:PTHR13271:SF37
HOGENOM:HOG000084500InterPro:IPR001214ncoils:CoilOMA:FGEDACT
Pfam:PF00856Pfscan:PS50280PhylomeDB:Q5PNU0PROSITE:PS50280
Proteomes:UP000006548RefSeq:NP_179475.3SMR:Q5PNU0STRING:3702.AT2G18850.1
SUPFAM:SSF82199TAIR:AT2G18850UniGene:At.39935UniProt:Q5PNU0
Coordinates (TAIR10) chr2:+:8160788..8163479
Molecular Weight (calculated) 61726.70 Da
IEP (calculated) 4.69
GRAVY (calculated) -0.21
Length 543 amino acids
Sequence (TAIR10)
(BLAST)
001: MVGALNIMSE TGDLCVELPK DDPFYHHKKK FLSCKGLCVK ETLNLSGSLS QQLLNAALEK LLHFGRIVNL DKVEVYFGED ACTPAGIYSV RNEISALSWI
101: LSLIPVSCKM QTQVDTFEAL RAALKGRINE VVGAEKEKAR VVDSYRCEKE SKLVEWGQDN GVKTKLQIAQ IDGYGRGAIA SEDLKFGDVA LEIPVSSIIS
201: EEYVYNSDMY PILETFDGIT SETMLLLWTM REKHNLDSKF KPYFDSLQEN FCTGLSFGVD AIMELDGTLL LDEIMQAKEL LRERYDELIP LLSNHREVFP
301: PELYTWEHYL WACELYYSNS MQIKFPDGKL KTCLIPVAGF LNHSIYPHIV KYGKVDIETS SLKFPVSRPC NKGEQCFLSY GNYSSSHLLT FYGFLPKGDN
401: PYDVIPLDFD VIDDEDIETE FSWTTHMLRG TWLSSNHNIF HYGLPTPLLN YLRKAHGLVH HSETDLWKNL EVEIGVLENL QSTFDDMMQN LGDADSIDRE
501: NADWDVKLAM EFKERQRKIV SSILDSCSAG IKLVQESITN PPV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)