suba logo
AT2G17870.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 0.984
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cold shock domain protein 3
Curator
Summary (TAIR10)
Encodes COLD SHOCK DOMAIN PROTEIN 3 (CSP3), involved in the acquisition of freezing tolerance.
Computational
Description (TAIR10)
cold shock domain protein 3 (CSP3); FUNCTIONS IN: DNA binding, zinc ion binding, nucleic acid binding; INVOLVED IN: response to cold, DNA duplex unwinding; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Cold-shock conserved site (InterPro:IPR019844), Zinc finger, CCHC retroviral-type (InterPro:IPR013084), Cold shock protein (InterPro:IPR011129), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Zinc finger, CCHC-type (InterPro:IPR001878), Cold-shock protein, DNA-binding (InterPro:IPR002059); BEST Arabidopsis thaliana protein match is: cold shock domain protein 1 (TAIR:AT4G36020.1); Has 72472 Blast hits to 41123 proteins in 2889 species: Archae - 51; Bacteria - 27281; Metazoa - 11105; Fungi - 2852; Plants - 6181; Viruses - 14957; Other Eukaryotes - 10045 (source: NCBI BLink).
Protein Annotations
BioGrid:1654eggNOG:COG1278eggNOG:KOG3070EMBL:AB308041EMBL:AY035133EMBL:AY062985EMBL:CP002685
EnsemblPlants:AT2G17870EnsemblPlants:AT2G17870.1entrez:816297Gene3D:2.40.50.140Gene3D:4.10.60.10GeneID:816297Genevisible:Q94C69
GO:GO:0003677GO:GO:0003723GO:GO:0005634GO:GO:0005737GO:GO:0006355GO:GO:0008270GO:GO:0009409
GO:GO:0009631GO:GO:0009826GO:GO:0032508Gramene:AT2G17870.1hmmpanther:PTHR11544HOGENOM:HOG000186262InParanoid:Q94C69
InterPro:IPR001878InterPro:IPR002059InterPro:IPR011129InterPro:IPR012340InterPro:IPR019844iPTMnet:Q94C69KEGG:ath:AT2G17870
KO:K09250OMA:ARDCRQNPaxDb:Q94C69Pfam:PF00098Pfam:PF00313Pfam:Q94C69Pfscan:PS50158
PhylomeDB:Q94C69PIR:T00837PRIDE:Q94C69PRINTS:PR00050PRO:PR:Q94C69PROSITE:PS00352PROSITE:PS50158
ProteinModelPortal:Q94C69Proteomes:UP000006548Reactome:R-ATH-72163Reactome:R-ATH-72165RefSeq:NP_565427.1scanprosite:PS00352SMART:SM00343
SMART:SM00357SMR:Q94C69STRING:3702.AT2G17870.1SUPFAM:SSF50249SUPFAM:SSF57756TAIR:AT2G17870tair10-symbols:ATCSP3
tair10-symbols:CSP3UniGene:At.19464UniProt:Q94C69
Coordinates (TAIR10) chr2:-:7764276..7765181
Molecular Weight (calculated) 29566.00 Da
IEP (calculated) 7.45
GRAVY (calculated) -0.52
Length 301 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMEDQSAAR SIGKVSWFSD GKGYGFITPD DGGEELFVHQ SSIVSDGFRS LTLGESVEYE IALGSDGKTK AIEVTAPGGG SLNKKENSSR GSGGNCFNCG
101: EVGHMAKDCD GGSGGKSFGG GGGRRSGGEG ECYMCGDVGH FARDCRQSGG GNSGGGGGGG RPCYSCGEVG HLAKDCRGGS GGNRYGGGGG RGSGGDGCYM
201: CGGVGHFARD CRQNGGGNVG GGGSTCYTCG GVGHIAKVCT SKIPSGGGGG GRACYECGGT GHLARDCDRR GSGSSGGGGG SNKCFICGKE GHFARECTSV
301: A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)