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AT2G03870.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.947
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Small nuclear ribonucleoprotein family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: U6 snRNA-associated Sm-like protein LSm7 (InterPro:IPR017132), Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: probable small nuclear ribonucleoprotein G (TAIR:AT2G23930.1); Has 1450 Blast hits to 1450 proteins in 289 species: Archae - 222; Bacteria - 0; Metazoa - 489; Fungi - 323; Plants - 216; Viruses - 0; Other Eukaryotes - 200 (source: NCBI BLink).
Protein Annotations
DNASU:814913eggNOG:ENOG4111VMJeggNOG:KOG1781EMBL:AC007196
EMBL:AK227358EMBL:BT003087EMBL:CP002685EnsemblPlants:AT2G03870
EnsemblPlants:AT2G03870.1EnsemblPlants:AT2G03870.2entrez:814913GeneID:814913
Genevisible:Q9SI54GO:GO:0000398GO:GO:0003723GO:GO:0005688
GO:GO:0005689GO:GO:0005732GO:GO:0005737GO:GO:0006396
GO:GO:0071004GO:GO:0071013GO:GO:0097526GO:GO:1990726
Gramene:AT2G03870.1Gramene:AT2G03870.2hmmpanther:PTHR10553HOGENOM:HOG000223548
InParanoid:Q9SI54IntAct:Q9SI54InterPro:IPR001163InterPro:IPR010920
InterPro:IPR017132KEGG:ath:AT2G03870KO:K12626OMA:ICPVDGM
PaxDb:Q9SI54Pfam:PF01423Pfam:Q9SI54PhylomeDB:Q9SI54
PIR:B84453PIRSF:PIRSF037188PRIDE:Q9SI54PRO:PR:Q9SI54
ProteinModelPortal:Q9SI54Proteomes:UP000006548Reactome:R-ATH-430039Reactome:R-ATH-72163
RefSeq:NP_178480.1RefSeq:NP_849931.1SMART:SM00651SMR:Q9SI54
STRING:3702.AT2G03870.1SUPFAM:SSF50182TAIR:AT2G03870UniGene:At.41365
UniProt:Q9SI54
Coordinates (TAIR10) chr2:+:1180306..1181256
Molecular Weight (calculated) 10774.00 Da
IEP (calculated) 4.81
GRAVY (calculated) -0.12
Length 99 amino acids
Sequence (TAIR10)
(BLAST)
1: MSGRKETVLD LAKFVDKGVQ VKLTGGRQVT GTLKGYDQLL NLVLDEAVEF VRDHDDPLKT TDQTRRLGLI VCRGTAVMLV SPTDGTEEIA NPFVTAEAV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)