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AT3G14080.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Small nuclear ribonucleoprotein family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT1G19120.1); Has 1121 Blast hits to 1119 proteins in 232 species: Archae - 63; Bacteria - 0; Metazoa - 413; Fungi - 327; Plants - 207; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG411224QeggNOG:KOG1782EMBL:AP000600EMBL:AY084768
EMBL:BT002795EMBL:BT004340EMBL:CP002686EnsemblPlants:AT3G14080
EnsemblPlants:AT3G14080.1EnsemblPlants:AT3G14080.2entrez:820624GeneID:820624
Genevisible:Q8LFL8GO:GO:0000290GO:GO:0000339GO:GO:0000932
GO:GO:0003723GO:GO:0006397GO:GO:0009414GO:GO:0009631
GO:GO:0016070GO:GO:0042538Gramene:AT3G14080.1Gramene:AT3G14080.2
hmmpanther:PTHR15588hmmpanther:PTHR15588:SF10HOGENOM:HOG000223544InParanoid:Q8LFL8
IntAct:Q8LFL8InterPro:IPR001163InterPro:IPR010920KEGG:ath:AT3G14080
KO:K12620OMA:CETSQGFPaxDb:Q8LFL8Pfam:PF01423
Pfam:Q8LFL8PhylomeDB:Q8LFL8PRIDE:Q8LFL8PRO:PR:Q8LFL8
ProteinModelPortal:Q8LFL8Proteomes:UP000006548Reactome:R-ATH-430039RefSeq:NP_566476.1
RefSeq:NP_850580.1SMART:SM00651SMR:Q8LFL8STRING:3702.AT3G14080.1
SUPFAM:SSF50182TAIR:AT3G14080UniGene:At.39294UniProt:Q8LFL8
Coordinates (TAIR10) chr3:+:4667717..4668989
Molecular Weight (calculated) 14693.80 Da
IEP (calculated) 4.73
GRAVY (calculated) -0.23
Length 128 amino acids
Sequence (TAIR10)
(BLAST)
001: MSWAGPEEIY LSTSLASYLD RKLLVLLRDG RKLMGTLRSF DQFANAVLEG ACERVIVGEQ YCDIPLGLYV IRGENVVLIG ELDTEREELP PHMIRVSEAE
101: IKRAQKVERE ASELRGTMRK RMEFLDFD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)