suba logo
AT2G01735.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.960
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING-finger protein for embryogenesis
Curator
Summary (TAIR10)
encodes a RING-H2 zinc finger protein essential for seed development.
Computational
Description (TAIR10)
RING-finger protein for embryogenesis (RIE1); FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Zinc finger, C3HC4 type (RING finger) family protein (TAIR:AT1G68070.1); Has 9688 Blast hits to 9662 proteins in 283 species: Archae - 0; Bacteria - 6; Metazoa - 2533; Fungi - 743; Plants - 5052; Viruses - 40; Other Eukaryotes - 1314 (source: NCBI BLink).
Protein Annotations
EC:6.3.2.-eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AC006069
EMBL:AY168924EMBL:CP002685EnsemblPlants:AT2G01735EnsemblPlants:AT2G01735.1
entrez:814703Gene3D:3.30.40.10GeneID:814703Genevisible:Q8GUU2
GO:GO:0008270GO:GO:0009793GO:GO:0016021GO:GO:0016567
GO:GO:0016874Gramene:AT2G01735.1hmmpanther:PTHR14155hmmpanther:PTHR14155:SF85
HOGENOM:HOG000240958InParanoid:Q8GUU2InterPro:IPR001841InterPro:IPR013083
KEGG:ath:AT2G01735OMA:HEDYNIEPaxDb:Q8GUU2Pfam:PF13639
Pfam:Q8GUU2Pfscan:PS50089PhylomeDB:Q8GUU2PRIDE:Q8GUU2
PRO:PR:Q8GUU2PROSITE:PS50089ProteinModelPortal:Q8GUU2Proteomes:UP000006548
RefSeq:NP_849924.1SMART:SM00184SMR:Q8GUU2STRING:3702.AT2G01735.1
SUPFAM:SSF57850TAIR:AT2G01735tair10-symbols:RIE1TMHMM:TMhelix
UniGene:At.47033UniGene:At.66449UniPathway:UPA00143UniProt:Q8GUU2
Coordinates (TAIR10) chr2:+:324499..325895
Molecular Weight (calculated) 40100.20 Da
IEP (calculated) 5.79
GRAVY (calculated) 0.15
Length 359 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSYSSDSTA ARDQHAPLLR PRHDGSFSSS SSSARPTALA VLLGRITGHR APSMLVRETA ARALEERRID WGYSKPVVAA DILWNAALVL ASAVMLVGTV
101: EERPNEPIRV WICVYGLQCL FHVVLVWSEY WRRNSTRRAR DLESYDHEDY NIEYDYEQDS DDNSTTYSFV KRCESINTVI SFIWWIIGFY WVVEGGDKLL
201: GEAPNLYWLS VIFLAIDVFF AVFCVVLACL VGIALCCCLP CIIALLYAVA GTEGVSEAEL GVLPLYKFKA FHSNEKNITG PGKMVPIPIN GLCLATERTL
301: LAEDADCCIC LSSYEDGAEL HALPCNHHFH STCIVKWLKM RATCPLCKYN ILKGTTDQS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)