AT1G79150.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : binding | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCAAT-binding factor (InterPro:IPR005612), Armadillo-type fold (InterPro:IPR016024), Nucleolar complex-associated (InterPro:IPR011501); Has 3184 Blast hits to 2630 proteins in 361 species: Archae - 21; Bacteria - 280; Metazoa - 1055; Fungi - 428; Plants - 179; Viruses - 26; Other Eukaryotes - 1195 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:29772716..29777874 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 94895.20 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.97 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.65 | ||||||||||||||||||||||||||||||||
| Length | 830 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGKNRRKQKV IPPPLLPPDV AEEDIEFSDE DLKYVKENTD YAQFVSQIDT AAINKQCGGR VMTVEDKYEE ERSKRKTLQE EKGNGEILVD PVDVLPVKTL 101: DGKLHYRTES KKSKLAEAET DEAEKDVLED EHVLNKSQRR EKAKKSKREA KKHEKDLPDE ILQEEEETPQ AAVLAEVKEE LSAEESFENK KNKIAELGML 201: LLSDPEANIK TLKDMLDICK DQNTKIVKLA LLSLLAVFKD IIPGYRIRLP TEKELEMKIS KEVKKTRFYE STLLKAYKSY LQKLIIFEKQ SVYNQIANRC 301: LCTLLEAVPH FNYRDNLLIA VVRNISSPDE VVRRLCCSTI RYLFSNEGKH GGELTVQAVR LIADHVKAHN CQLHPNAIEV FMSIRFDEDI GKPNKEDEHN 401: KKYKKNNKRK TQEEQNQVQE NERKKSKKDM MSKIRDEVSA DHRGVTYEPD AKERRKMQTE TLSAVFETYF RILRNTMYTI GERTEEIPTS NPGAFGSHPL 501: LAPCLDGLAK FTQQLDLDYM GDLMNYLKKL ASSSSSVSNN TKQKNSKLLT VSERLRCCLV AFKVMRSNLN ALNVDLQDFF VQLYNLILEY RPGRDSGVIL 601: AESLKIMLCD DRHQDMQKAA AFVKRLATFA LCFGCAESMS ALVTLKTLLQ KNVKCRNLLE NDAGGGSVSG SIAKYQPYAT DPNLSGALAT VLWELSLLSK 701: HYHPAISTMA TTVSNMNTSQ SQTFLSAVTP QQAFADFSLV KESFEPKNES RKLNNKRKRE SLPEEAKNVP EIDMVKLSKK LKENFTILRD IKEDERVRME 801: LLQSEEKKPL KKQNNVVKKK LKNPKSKKQI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)