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AT1G76920.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.571
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : F-box family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Kelch repeat type 2 (InterPro:IPR011498); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT3G61590.2); Has 279 Blast hits to 279 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 279; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:29246eggNOG:ENOG410IH5IeggNOG:ENOG410YBGKEMBL:AC002291EMBL:AY065102EMBL:AY085473EMBL:BT008455
EMBL:CP002684EnsemblPlants:AT1G76920EnsemblPlants:AT1G76920.1entrez:844027Gene3D:2.120.10.80GeneID:844027Genevisible:O49279
GO:GO:0005634GO:GO:0016567Gramene:AT1G76920.1hmmpanther:PTHR32133hmmpanther:PTHR32133:SF84HOGENOM:HOG000241138InParanoid:O49279
IntAct:O49279InterPro:IPR001810InterPro:IPR011498InterPro:IPR015915KEGG:ath:AT1G76920OMA:GKWMKHPPaxDb:O49279
Pfam:O49279Pfam:PF00646Pfam:PF07646Pfscan:PS50181PhylomeDB:O49279PIR:A96798PRIDE:O49279
PRO:PR:O49279PROSITE:PS50181ProteinModelPortal:O49279Proteomes:UP000006548RefSeq:NP_565142.1SMART:SM00256STRING:3702.AT1G76920.1
SUPFAM:0052715SUPFAM:SSF81383TAIR:AT1G76920UniGene:At.21630UniGene:At.67164UniPathway:UPA00143UniProt:O49279
Coordinates (TAIR10) chr1:+:28892295..28893419
Molecular Weight (calculated) 42496.50 Da
IEP (calculated) 8.88
GRAVY (calculated) -0.10
Length 374 amino acids
Sequence (TAIR10)
(BLAST)
001: MESSPVNCLP PDSLHQIFSS LPIRDIMICR SVCKFFNQLL TSQCFIEIIS TRPPLNLLAL RPPHHHHSHR HSGNGHATNI RPYIHVYDPE QNQWFRFNLD
101: FLPFRSPQPV ASSSGLIYLW GDSIDLAESS KSLVACNPLT RQFKVLPQLG SAWSRHGTVL VDSVNRVMVL TELAALYYSG TVVANQWLKF SSNLPSKPRS
201: PVLMSSSVFA LCDVGSPWRS QWKLFSCKLT NLTITHTNWV CLEKHEWGDI FDIIKRPRLL RGNGDSKLLM IGGLKSTFSL NPACSTILIL RLDLESLEWE
301: EAGRMPLEMY RGFQESSKFK VFGGGDRVYF SAKRMGKLAM WDCWQGWRWI EGVPGYADGL CRGFVFDAKL TLMP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)