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AT1G76630.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.806
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G04240.1); Has 7905 Blast hits to 5237 proteins in 907 species: Archae - 493; Bacteria - 3636; Metazoa - 1081; Fungi - 415; Plants - 279; Viruses - 0; Other Eukaryotes - 2001 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ZG1HeggNOG:KOG1127EMBL:CP002684EnsemblPlants:AT1G76630EnsemblPlants:AT1G76630.1entrez:843996ExpressionAtlas:F4I3Z6
Gene3D:1.25.40.10GeneID:843996Gramene:AT1G76630.1hmmpanther:PTHR15704hmmpanther:PTHR15704:SF7InterPro:IPR011990InterPro:IPR013026
InterPro:IPR013105InterPro:IPR019734iPTMnet:F4I3Z6PaxDb:F4I3Z6Pfam:PF07719Pfam:PF13414Pfscan:PS50005
Pfscan:PS50293PRIDE:F4I3Z6PROSITE:PS50005PROSITE:PS50293ProteinModelPortal:F4I3Z6Proteomes:UP000006548RefSeq:NP_177789.2
SMART:SM00028SMR:F4I3Z6STRING:3702.AT1G76630.2SUPFAM:SSF48452TAIR:AT1G76630UniGene:At.34635UniProt:F4I3Z6
Coordinates (TAIR10) chr1:+:28759699..28765042
Molecular Weight (calculated) 126825.00 Da
IEP (calculated) 6.77
GRAVY (calculated) -0.09
Length 1140 amino acids
Sequence (TAIR10)
(BLAST)
0001: MELEQLKKSV EENPDDSSLQ FELGLYLWDN GGDSEKAAEH FVLSAKSDPN NAVAFKYLGH YYSRVTLDLN RAAKCYQRAV LINPNDSDSG EALCDLFDRQ
0101: GKEILEIAVC RDASEKSPKA FWAFCRLGYI QLHQKKWSEA VQSLQHAIRG YPTMSDLWEA LGLAYQRLGM FTAAIKAYGR AIELDETKIF ALVESANIFL
0201: MLGSYRKGVE LFEQALKISP QNISVLYGLA SGLLSWSKEC INLGAFGWAA SLLEDARKAA KASSELASSM SCIWKLHGDI QLTYARCFPW SGGTENSEFT
0301: LKTFSDSILS WRSICYSAAL SAKASYQRAL HLAPWQANVY TDIAITCDLV SSLSDDSDTS SSWKLPEKMV LGALLLECEN SEFWVALGCM SDNSALKLHA
0401: LIRALHLDVS LAVAWAFMGQ IFRESDEMKF AKQAFDCARS IDPTLALPWA GSADTYARES TSDEAFESCL RAAQISPLAE FQVGLAWLAL LQGNISSPQI
0501: FACIEQAVQR SPYYPEPHNL HGLVCEARHN YHTAIASYRL ALAAMSIYPE SSVKSHAGKV SINLVRSLSK AGRFKESVME CANLKSKGLL DAGGLQIYAF
0601: SLWRTGQNDS ALSVIRDLAD SAITSIQKMP KDFFQSSKIS FIVSAIHSLD QSDRLQSIVA STRSYITSQE EIVAMHYLIA LSKLLKTGAG DFLGYEKGIA
0701: HLSKAIHMYP HSNLIRNLLG YILLAGEGMK DACTASRCCI INVSECANKE GLKSALEVLG GGSVACNVIG NTAPRFSFPT CHCQYLNAPV VVVELQRFLH
0801: QEPSNSSVRY LLILNLVQKA REQRFPRQLC RAIERLISVA LSDETCSKEG EYKKFQLLLC ASEISLQMGN IAESINHARK ASSLSLPSSY LFLGHLQLCR
0901: AYAANGSTKN MQEEYRACLE LKTDSNIGWI CLKLIESQYN LEPDANLLEM SLQECSSQKK NSWKEWMAVY SLARGLDSTG KKDFFSAEEF LAQACSLLNS
1001: ESCLLLCHGA VCMELARQSN DSQFLSLAVK SLSKVQASSL FPLPIVYTLL AQAHGSLGSK EKWEKNLRLE WFCWPPEMRP AEVYFQMHIL ARQSEDRPET
1101: TSGIENYQSP EKWVIRAIHT DPSCRRYWKV LDKLVQHPMS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)