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AT1G75440.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ubiquitin-conjugating enzyme 16
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ubiquitin-conjugating enzyme 16 (UBC16); FUNCTIONS IN: ubiquitin-protein ligase activity, small conjugating protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 18 (TAIR:AT5G42990.1); Has 8796 Blast hits to 8793 proteins in 382 species: Archae - 0; Bacteria - 2; Metazoa - 3895; Fungi - 1929; Plants - 1614; Viruses - 20; Other Eukaryotes - 1336 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G75440-MONOMERBioGrid:29099EC:2.3.2.23eggNOG:COG5078
eggNOG:KOG0427EMBL:AC023754EMBL:AF028339EMBL:AY065459
EMBL:AY091226EMBL:CP002684EMBL:DQ027030EnsemblPlants:AT1G75440
EnsemblPlants:AT1G75440.1entrez:843880Gene3D:3.10.110.10GeneID:843880
Genevisible:Q9FWT2GO:GO:0000209GO:GO:0005524GO:GO:0005634
GO:GO:0005737GO:GO:0031625GO:GO:0043161GO:GO:0061630
Gramene:AT1G75440.1hmmpanther:PTHR24067hmmpanther:PTHR24067:SF155HOGENOM:HOG000233453
InParanoid:Q9FWT2IntAct:Q9FWT2InterPro:IPR000608InterPro:IPR016135
InterPro:IPR023313KEGG:ath:AT1G75440KO:K10688OMA:ERPPGDK
PaxDb:Q9FWT2Pfam:PF00179Pfam:Q9FWT2Pfscan:PS50127
PhylomeDB:Q9FWT2PIR:A96785PRIDE:Q9FWT2PRO:PR:Q9FWT2
PROSITE:PS00183PROSITE:PS50127ProteinModelPortal:Q9FWT2Proteomes:UP000006548
RefSeq:NP_565110.1scanprosite:PS00183SMR:Q9FWT2STRING:3702.AT1G75440.1
SUPFAM:SSF54495TAIR:AT1G75440tair10-symbols:UBC16UniGene:At.16253
UniGene:At.28601UniPathway:UPA00143UniProt:Q9FWT2
Coordinates (TAIR10) chr1:+:28313623..28314960
Molecular Weight (calculated) 18486.00 Da
IEP (calculated) 8.10
GRAVY (calculated) -0.56
Length 161 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSSGAPSRK TLSKIATNRL QKELVEWQMN PPTGFKHKVT DNLQRWIIEV IGAPGTLYAN DTYQLQVDFP EHYPMESPQV IFLHPAPLHP HIYSNGHICL
101: DILYDSWSPA MTVSSICISI LSMLSSSTEK QRPTDNDRYV KNCKNGRSPK ETRWWFHDDK V
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)