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AT1G75200.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:22923678 (2012): mitochondrion
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : flavodoxin family protein / radical SAM domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
flavodoxin family protein / radical SAM domain-containing protein; FUNCTIONS IN: iron-sulfur cluster binding, oxidoreductase activity, FMN binding, catalytic activity; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Flavodoxin/nitric oxide synthase (InterPro:IPR008254), Radical SAM (InterPro:IPR007197), Wyosine base formation (InterPro:IPR013917); BEST Arabidopsis thaliana protein match is: P450 reductase 2 (TAIR:AT4G30210.2); Has 3108 Blast hits to 3089 proteins in 883 species: Archae - 191; Bacteria - 976; Metazoa - 668; Fungi - 593; Plants - 205; Viruses - 0; Other Eukaryotes - 475 (source: NCBI BLink).
Protein Annotations
EC:4.1.3.44eggNOG:COG0731eggNOG:KOG1160EMBL:AC025814EMBL:AY080784EMBL:AY114005EMBL:CP002684
EnsemblPlants:AT1G75200EnsemblPlants:AT1G75200.1entrez:843857Gene3D:3.20.20.70Gene3D:3.40.50.360GeneID:843857Genevisible:Q8RXN5
GO:GO:0005506GO:GO:0005739GO:GO:0008033GO:GO:0010181GO:GO:0016829GO:GO:0051539GO:GO:0055114
Gramene:AT1G75200.1hmmpanther:PTHR13930hmmpanther:PTHR13930:SF0HOGENOM:HOG000216584InParanoid:Q8RXN5InterPro:IPR001094InterPro:IPR007197
InterPro:IPR008254InterPro:IPR013785InterPro:IPR013917InterPro:IPR029039KEGG:ath:AT1G75200KO:K15449OMA:EGDCNVV
PaxDb:Q8RXN5Pfam:PF00258Pfam:PF04055Pfam:PF08608Pfam:Q8RXN5Pfscan:PS50902PhylomeDB:Q8RXN5
PIR:C96782PRIDE:Q8RXN5PRINTS:PR00369PRO:PR:Q8RXN5PROSITE:PS50902ProteinModelPortal:Q8RXN5Proteomes:UP000006548
RefSeq:NP_177656.2SMR:Q8RXN5STRING:3702.AT1G75200.1SUPFAM:SSF102114SUPFAM:SSF52218SwissPalm:Q8RXN5TAIR:AT1G75200
TMHMM:TMhelixUniGene:At.34805UniPathway:UPA00375UniProt:Q8RXN5
Coordinates (TAIR10) chr1:-:28220849..28223597
Molecular Weight (calculated) 72083.90 Da
IEP (calculated) 6.75
GRAVY (calculated) -0.33
Length 647 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTTSSVRVR LAFVALLSAT TFYCIHKYRR LKHLKNLSLN PSSTLKASRG KIFFISQTGT AKALAQRLHE LCASNDIAFD IVDPHSYEPE DLPKETLVLF
101: IASTWDGGKP PKNGEFLVNW LGESAEDFRV GSLLLSDCKF AVFGVGSRAY GESYNAVAKE LSSRMIGLGG LEMIPVGEGD VDDGELDRAF QDWCDGVIRV
201: LKGGSAQETN GVSQQIGAVE DDLEYYDSTD EEDEDNDADG GIVDLEDIAG KAPSKRNGVV KVTKVDGKKE MVTPVIRASL TKQGYKIIGS HSGVKICRWT
301: KSQLRGRGGC YKHSFYGIES HRCMETTPSL ACANKCVFCW RHHTNPVGKS WQWKMDEPSV IVKGALDLHK NMIKQMKGVP GVTPEKLQEG LNPRHCALSL
401: VGEPIMYPEI NALVDELHGR RISTFLVTNA QFPEKILMMK PITQLYVSVD AATKESLKAI DRPLFADFWE RFIDSLKALQ EKQQRTVYRL TLVKGWNTEE
501: LDAYFNLFSI GKPDFIEIKG VTYCGSSATS KLTMENVPWH TDVKAFSEAL SLKSNGEYEV ACEHAHSCCV LLGRTEKFKV DGKWFTWIDY EKFHDLVASG
601: EPFTSTDYMA QTPSWAVYGA QEGGFDPGQL RYKKERNHPP KPQAVLA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)