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AT1G70590.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.976
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : F-box family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: HCP-like superfamily protein (TAIR:AT1G18260.1); Has 16059 Blast hits to 6577 proteins in 1289 species: Archae - 0; Bacteria - 11525; Metazoa - 502; Fungi - 723; Plants - 391; Viruses - 15; Other Eukaryotes - 2903 (source: NCBI BLink).
Protein Annotations
BioGrid:28616eggNOG:COG0790eggNOG:KOG1550EMBL:AC010796
EMBL:AC011663EMBL:AY037204EMBL:BT002677EMBL:CP002684
EnsemblPlants:AT1G70590EnsemblPlants:AT1G70590.1entrez:843396Gene3D:1.25.40.10
GeneID:843396Genevisible:Q94C27Gramene:AT1G70590.1hmmpanther:PTHR11102
HOGENOM:HOG000083876InParanoid:Q94C27IntAct:Q94C27InterPro:IPR001810
InterPro:IPR006597InterPro:IPR011990InterPro:IPR013026KEGG:ath:AT1G70590
OMA:ACRAWRDPaxDb:Q94C27Pfam:PF00646Pfam:PF08238
Pfam:Q94C27Pfscan:PS50293PhylomeDB:Q94C27PIR:A96730
PRIDE:Q94C27PRO:PR:Q94C27PROSITE:PS50293ProteinModelPortal:Q94C27
Proteomes:UP000006548RefSeq:NP_564992.1SMART:SM00671SMR:Q94C27
STRING:3702.AT1G70590.1SUPFAM:SSF81383SUPFAM:SSF81901TAIR:AT1G70590
UniGene:At.18112UniProt:Q94C27
Coordinates (TAIR10) chr1:+:26618403..26620159
Molecular Weight (calculated) 39136.00 Da
IEP (calculated) 10.46
GRAVY (calculated) -0.49
Length 351 amino acids
Sequence (TAIR10)
(BLAST)
001: MKQRTWPCRS EGSRFSSLSF LKPHDKDKRS RISSINKATA KSTTSSRSSS SSSSSRPPSN EFGDFSMLPY DILMKIAAPF SHPNLQAASL VCKSWRDALK
101: PLRESMLLIR WGKKYKHGRG GVRANLDKAL DSFLKGAMRG STLAMVDAGL VYWERGEKEK AVNLYRRASE LGDAVGQCNL GIAYLQVQPS NPKEAMKWLK
201: QSAENGYVRA QYQLALCLHH GRVVQTNLLE ATKWYLKAAE GGYVRAMYNI SLCYSVGEGL PQNRKLARKW MKRAADHGHS KAQFEHGLAL FSEGEMLKSV
301: LYLELAERGG EAAATPVKEV VHQQLSATFG GQAVHHAIHQ ANNWRPLPVT R
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)