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AT1G56680.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Chitinase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Chitinase family protein; FUNCTIONS IN: chitin binding, chitinase activity; INVOLVED IN: carbohydrate metabolic process, cell wall macromolecule catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: shoot apex, sepal, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 19 (InterPro:IPR016283), Chitin-binding, type 1 (InterPro:IPR001002), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: Chitinase family protein (TAIR:AT2G43600.1); Has 1945 Blast hits to 1934 proteins in 382 species: Archae - 0; Bacteria - 418; Metazoa - 15; Fungi - 16; Plants - 1444; Viruses - 3; Other Eukaryotes - 49 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G56680-MONOMERCAZy:CBM18CAZy:GH19eggNOG:COG3979
eggNOG:KOG4742EMBL:AC009323EMBL:CP002684EnsemblPlants:AT1G56680
EnsemblPlants:AT1G56680.1entrez:842124Gene3D:3.30.60.10GeneID:842124
GO:GO:0004568GO:GO:0005975GO:GO:0006032GO:GO:0008061
GO:GO:0016998Gramene:AT1G56680.1hmmpanther:PTHR22595hmmpanther:PTHR22595:SF37
HOGENOM:HOG000231411InterPro:IPR000726InterPro:IPR001002InterPro:IPR016283
InterPro:IPR023346KEGG:00520+3.2.1.14KEGG:ath:AT1G56680KO:K01183
Pfam:PF00182PhylomeDB:Q9FXB8PIR:F96608PIRSF:PIRSF001060
ProDom:PD000609Proteomes:UP000006548RefSeq:NP_176061.1SMART:SM00270
SMR:Q9FXB8STRING:3702.AT1G56680.1SUPFAM:SSF53955SUPFAM:SSF57016
TAIR:AT1G56680TMHMM:TMhelixUniGene:At.42726UniProt:Q9FXB8
Coordinates (TAIR10) chr1:-:21250428..21251417
Molecular Weight (calculated) 31184.50 Da
IEP (calculated) 8.66
GRAVY (calculated) -0.20
Length 280 amino acids
Sequence (TAIR10)
(BLAST)
001: MATQNKIQKN SLIIFLFTLV VIAQTATSQN CLTIGCPGIN ECCSHTGYCG TNVEHCGFWC LSGPCQLSKS SSSYRLNDGP RGKIESIVTP ALFHRLMRKV
101: GSNCTGKGFY TREAFITAVK SFEGYKGTVA KREIAAILAQ FSYESGNFCY KEEVTSETYC SSSKTYPCQS GKKYYGRGLL QSIKWNEFYG EAGKYLGLPL
201: LKDPDMVARS PEVAFKFAMW FWKTEVGPSL RLGFGATTMR INGIECGGMS WNAEAMQNRI NQYLEICKWF GVNPGKDLYC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)