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AT1G51450.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : TRAUCO
Curator
Summary (TAIR10)
Nuclear protein required for early embryogenesis.
Computational
Description (TAIR10)
TRAUCO (TRO); FUNCTIONS IN: transcription regulator activity; INVOLVED IN: histone methylation, embryo development; LOCATED IN: nucleus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SPla/RYanodine receptor subgroup (InterPro:IPR018355), B302 (SPRY)-like (InterPro:IPR001870), SPla/RYanodine receptor SPRY (InterPro:IPR003877); Has 2366 Blast hits to 2103 proteins in 282 species: Archae - 12; Bacteria - 162; Metazoa - 1213; Fungi - 403; Plants - 173; Viruses - 13; Other Eukaryotes - 390 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Y5GCeggNOG:KOG2626EMBL:AC024261EMBL:AK229176EMBL:BT023430EMBL:CP002684EnsemblPlants:AT1G51450
EnsemblPlants:AT1G51450.1entrez:841570GeneID:841570Genevisible:Q9C8J7GO:GO:0005634GO:GO:0006351GO:GO:0009793
GO:GO:0010228GO:GO:0031490GO:GO:0044212GO:GO:0048188GO:GO:0060776GO:GO:0080182Gramene:AT1G51450.1
hmmpanther:PTHR10598HOGENOM:HOG000152215InParanoid:Q9C8J7InterPro:IPR001870InterPro:IPR003877InterPro:IPR013320iPTMnet:Q9C8J7
KEGG:ath:AT1G51450KO:K14964OMA:ICAPDAKPaxDb:Q9C8J7Pfam:PF00622Pfam:Q9C8J7Pfscan:PS50188
PhylomeDB:Q9C8J7PIR:G96552PRIDE:Q9C8J7PRO:PR:Q9C8J7PROSITE:PS50188ProteinModelPortal:Q9C8J7Proteomes:UP000006548
RefSeq:NP_175556.1SMART:SM00449SMR:Q9C8J7STRING:3702.AT1G51450.1SUPFAM:SSF49899TAIR:AT1G51450tair10-symbols:TRO
UniGene:At.37815UniProt:Q9C8J7
Coordinates (TAIR10) chr1:+:19074399..19076220
Molecular Weight (calculated) 55509.30 Da
IEP (calculated) 4.24
GRAVY (calculated) -0.63
Length 509 amino acids
Sequence (TAIR10)
(BLAST)
001: MESLQSNSKI EEAEQNPKIE EAQVSVSLPE EPTGVLLPSE LVDDSAPPES SDAVEESIET ASEAEVSISL LEGTTTGTAL LPSEENDLAP LESSGIIEEP
101: IDTDLEKLDV VAMDVDQPGS DLKIESDSFS EEAPTTSSSD NPKSPKLDSV ANQNGSAMEE DEGDEEQDDP PHKKLKQLDC LTSVAVKEEE EPEQVLPSEA
201: MVVEEAATLV ASAAKKSKSK KKNNNVWVTK STRKGKKKSK ANTPNPAAVE DKVLITPVPR FPDKGDDTPD LEICLSKVYK AEKVEISEDR LTAGSSKGYR
301: MVRATRGVVE GAWYFEIKVL SLGETGHTRL GWSTDKGDLQ APVGYDGNSF GFRDIDGCKI HKALRETYAE EGYKEGDVIG FYINLPDGES FAPKPPHYVF
401: YKGQRYICAP DAKEEPPKVV PGSEISFFKN GVCQGAAFTD IVGGRYYPAA SMYTLPDQSN CLVKFNFGPS FEFFPEDFGG RATPRPMWEV PYHGFNGRLE
501: TNGSEDMKS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)