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AT1G48270.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : G-protein-coupled receptor 1
Curator
Summary (TAIR10)
encodes a protein similar to G-coupled receptor with 7 transmembrane regions. Overexpression studies suggest this gene is involved in dormancy and flowering. Reduction of expression results in decreased sensitivity to cytokinin.
Computational
Description (TAIR10)
G-protein-coupled receptor 1 (GCR1); FUNCTIONS IN: G-protein coupled receptor activity; INVOLVED IN: in 7 processes; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: G-protein-coupled receptor, GCR1 putative (InterPro:IPR022340), GPCR, family 2-like (InterPro:IPR017981), GCR1-cAMP receptor (InterPro:IPR022343); Has 592 Blast hits to 590 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 324; Fungi - 88; Plants - 42; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).
Protein Annotations
BioGrid:26472eggNOG:ENOG410IGCQeggNOG:ENOG4110A1UEMBL:AC007932
EMBL:AK228479EMBL:AY099871EMBL:BT000314EMBL:CP002684
EMBL:U95142EMBL:U95143EMBL:Y11278EnsemblPlants:AT1G48270
EnsemblPlants:AT1G48270.1entrez:841247GeneID:841247Genevisible:O04714
GO:GO:0000278GO:GO:0004930GO:GO:0005774GO:GO:0005794
GO:GO:0005886GO:GO:0006571GO:GO:0006629GO:GO:0007166
GO:GO:0007202GO:GO:0009094GO:GO:0009735GO:GO:0009736
GO:GO:0009738GO:GO:0009740GO:GO:0009742GO:GO:0009785
GO:GO:0009788GO:GO:0009845GO:GO:0009908GO:GO:0009939
GO:GO:0010231GO:GO:0010244GO:GO:0032960GO:GO:0044214
Gramene:AT1G48270.1hmmpanther:PTHR23112hmmpanther:PTHR23112:SF0HOGENOM:HOG000030213
InParanoid:O04714IntAct:O04714InterPro:IPR017981InterPro:IPR022340
InterPro:IPR022343KEGG:ath:AT1G48270OMA:WAFGTINPaxDb:O04714
Pfam:O04714Pfam:PF05462Pfscan:PS50261PhylomeDB:O04714
PIR:F96522PRINTS:PR02000PRINTS:PR02001PRO:PR:O04714
PROSITE:PS50261ProteinModelPortal:O04714Proteomes:UP000006548RefSeq:NP_175261.1
STRING:3702.AT1G48270.1SUPFAM:SSF81321TAIR:AT1G48270tair10-symbols:GCR1
TMHMM:TMhelixUniGene:At.21469UniProt:O04714
Coordinates (TAIR10) chr1:-:17828314..17830214
Molecular Weight (calculated) 37250.30 Da
IEP (calculated) 9.59
GRAVY (calculated) 0.20
Length 326 amino acids
Sequence (TAIR10)
(BLAST)
001: MSAVLTAGGG LTAGDRSIIT AINTGASSLS FVGSAFIVLC YCLFKELRKF SFKLVFYLAL SDMLCSFFLI VGDPSKGFIC YAQGYTTHFF CVASFLWTTT
101: IAFTLHRTVV KHKTDVEDLE AMFHLYVWGT SLVVTVIRSF GNNHSHLGPW CWTQTGLKGK AVHFLTFYAP LWGAILYNGF TYFQVIRMLR NARRMAVGMS
201: DRVDQFDNRA ELKVLNRWGY YPLILIGSWA FGTINRIHDF IEPGHKIFWL SVLDVGTAAL MGLFNSIAYG FNSSVRRAIH ERLELFLPER LYRWLPSNFR
301: PKNHLILHQQ QQQRSEMVSL KTEDQQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)