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AT1G34150.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.995
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pseudouridine synthase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase I, TruA, N-terminal (InterPro:IPR020094), Pseudouridine synthase I, TruA, alpha/beta domain (InterPro:IPR020097), Pseudouridine synthase I, TruA, C-terminal (InterPro:IPR020095), Pseudouridine synthase I, TruA (InterPro:IPR001406); BEST Arabidopsis thaliana protein match is: Pseudouridine synthase family protein (TAIR:AT3G06950.1); Has 7569 Blast hits to 7566 proteins in 2644 species: Archae - 155; Bacteria - 5313; Metazoa - 277; Fungi - 265; Plants - 164; Viruses - 0; Other Eukaryotes - 1395 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G34150-MONOMEREC:5.4.99.-eggNOG:COG0101eggNOG:KOG2554EMBL:AF360187EMBL:AY040002EMBL:CP002684
EnsemblPlants:AT1G34150EnsemblPlants:AT1G34150.1entrez:840314Gene3D:3.30.70.580Gene3D:3.30.70.660GeneID:840314GO:GO:0001522
GO:GO:0003723GO:GO:0008033GO:GO:0009982Gramene:AT1G34150.1HAMAP:MF_00171hmmpanther:PTHR11142hmmpanther:PTHR11142:SF5
HOGENOM:HOG000199032InterPro:IPR001406InterPro:IPR020094InterPro:IPR020095InterPro:IPR020097InterPro:IPR020103KEGG:ath:AT1G34150
KO:K01855ncoils:CoilOMA:YLFWKGDPANTHER:PTHR11142Pfam:PF01416PhylomeDB:Q9C5K6Proteomes:UP000006548
RefSeq:NP_564438.1SMR:Q9C5K6STRING:3702.AT1G34150.1SUPFAM:SSF55120TAIR:AT1G34150TIGRfam:TIGR00071TIGRFAMs:TIGR00071
UniGene:At.19010UniProt:Q9C5K6
Coordinates (TAIR10) chr1:+:12436086..12439237
Molecular Weight (calculated) 50981.90 Da
IEP (calculated) 8.65
GRAVY (calculated) -0.50
Length 446 amino acids
Sequence (TAIR10)
(BLAST)
001: MTISDAKSDP GGDDRDSEIA KETELVFLRN RVKELEVENA KLLSQVSSCQ CQQMEVKHDR SLSDSSSLVR RRRVRKGDKN SIPSHLISKR YVALKIMYFG
101: KRFYGFSAEA QMEPSIESEV FKALERTRLL VGDKKDSCYS RCGRTDKGVS STGQVIALFL RSRLKSPPGD SKAQVNGRTG ERPEYDYVRV LNRALPDDIR
201: VIGWSPAPID FHARFSCYAR EYKYFFWRQN LNLSAMDFAG KKFIGEHDFR NFCKMDVANV HCYTRRVTFF EVSPCQNSHE GDQLCTFTMR GSAFLWHQIR
301: CMVAVLFMIG QGVESVDVID TLLDTKKTPR KPQYLLASEI PLVLRTCEFE NVDFICSPGA AESLRSHFKN ESLTYQLESV IYQEALRNCL PLSNNVSTEE
401: SSCNGVEKKK KRAEHVPLLS RPTEPSYEER TAKLKPRKEE TLACVV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)