AT4G00590.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 0.932 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein; FUNCTIONS IN: hydrolase activity; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase T2, asparaginase 2 (InterPro:IPR000246); BEST Arabidopsis thaliana protein match is: N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (TAIR:AT3G16150.1); Has 3104 Blast hits to 3030 proteins in 885 species: Archae - 117; Bacteria - 1482; Metazoa - 502; Fungi - 255; Plants - 169; Viruses - 0; Other Eukaryotes - 579 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr4:+:252835..254880 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 42628.90 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.39 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.01 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 408 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MMAGDGADQS RRFFVAVHVG AGYHAAANEK ALRSVMRRAC LAASTILRQD SGECIDAVSA AIQVLEDDPS TNAGRGSNLT EDGHVECDAS LMDGDSGMFG 101: GVGAVPGVRN AIKIAALLVK EQITGSTLLG RIPPMLLVGE GARRWGKSKS VLIPGTVTEA DQWLVTERAR NQWRRFKAML SEVGAKSILS AEEHPRGTEN 201: NETCEENVSS CAAADEDKIM DTVGVICVDN EGHIACGSSS GGIAMKISGR VGLAATYGSG CWASSKGPFG APFLVGCCVS GAGEYLMRGF AARECCTSLA 301: LSQAGPASAA MKVLRSVMHQ ESSKIGTADK TAGILVVQAD ASVVVPGSKP ELNAVEIAAA YSSLSFGVGY YGNSIEKPKI SILRTRRQMS EAGVDHFEAR 401: IDLRPTCC |
||||||||||||||||||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)