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AT1G33520.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : D111/G-patch domain-containing protein
Curator
Summary (TAIR10)
Has single homolog in Arabidopsis, also homologs in human, mouse and C. elegans; contains one G-patch domain (known to mediate RNA-protein interactions) and two KOW domains (may bind RNA and/or protein); localized to the nucleus; mutant suppresses high SA levels and constitutive disease resistance in snc1 npr1 background; required for basal resistance against Pseudomonas syringae maculicola ES4326 and R gene-mediated resistance specified by RPM1, PPS4 and RPP4;
Computational
Description (TAIR10)
modifier of snc1, 2 (MOS2); CONTAINS InterPro DOMAIN/s: D111/G-patch (InterPro:IPR000467), KOW (InterPro:IPR005824); BEST Arabidopsis thaliana protein match is: D111/G-patch domain-containing protein (TAIR:AT4G25020.1); Has 453 Blast hits to 441 proteins in 156 species: Archae - 0; Bacteria - 0; Metazoa - 209; Fungi - 80; Plants - 100; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YYBEeggNOG:KOG4315EMBL:AC051630EMBL:AY091044EMBL:BT006036EMBL:CP002684EMBL:DQ202264
EnsemblPlants:AT1G33520EnsemblPlants:AT1G33520.1entrez:840246GeneID:840246Genevisible:Q9C801GO:GO:0003723GO:GO:0005634
GO:GO:0009870GO:GO:0042742Gramene:AT1G33520.1hmmpanther:PTHR15818hmmpanther:PTHR15818:SF2HOGENOM:HOG000239915InParanoid:Q9C801
InterPro:IPR000467InterPro:IPR005824InterPro:IPR026822KEGG:ath:AT1G33520KO:K13101OMA:NPSEADPPaxDb:Q9C801
Pfam:PF12656Pfam:Q9C801Pfscan:PS50174PhylomeDB:Q9C801PIR:A86459PRIDE:Q9C801PRO:PR:Q9C801
PROSITE:PS50174ProteinModelPortal:Q9C801Proteomes:UP000006548RefSeq:NP_174617.1SMART:SM00443SMART:SM00739SMR:Q9C801
STRING:3702.AT1G33520.1TAIR:AT1G33520tair10-symbols:MOS2UniGene:At.39925UniGene:At.72521UniProt:Q9C801
Coordinates (TAIR10) chr1:-:12157488..12158876
Molecular Weight (calculated) 51030.00 Da
IEP (calculated) 8.15
GRAVY (calculated) -0.67
Length 462 amino acids
Sequence (TAIR10)
(BLAST)
001: MKLSFSLPSK SKPKVTATTA DGNNAVDDGT SKEFVTEFDP SKTLANSIPK YVIPPIENTW RPHKKMKNLD LPLQSGNAGS GLEFEPEVPL PGTEKPDNIS
101: YGLNLRQKVK DDSIGGDAVE ERKVSMGEQL MLQSLRRDLM SLADDPTLED FESVPVDGFG AALMAGYGWK PGKGIGKNAK EDVEIKEYKK WTAKEGLGFD
201: PDRSKVVDVK AKVKESVKLD KKGVGINGGD VFFVGKEVRI IAGRDVGLKG KIVEKPGSDF FVIKISGSEE EVKVGVNEVA DLGSKEEEKC LKKLKDLQLN
301: DREKDKKTSG RGRGAERGSR SEVRASEKQD RGQTRERKVK PSWLRSHIKV RIVSKDWKGG RLYLKKGKVV DVVGPTTCDI TMDETQELVQ GVDQELLETA
401: LPRRGGPVLV LSGKHKGVYG NLVEKDLDKE TGVVRDLDNH KMLDVRLDQV AEYMGDMDDI EY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)