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AT1G30200.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.916
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : F-box family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G46170.1); Has 148 Blast hits to 147 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 148; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:25135eggNOG:ENOG410IG8TeggNOG:ENOG41119HQEMBL:AC073506EMBL:AC074176EMBL:AY037238EMBL:AY058867
EMBL:BT000503EMBL:CP002684EnsemblPlants:AT1G30200EnsemblPlants:AT1G30200.1EnsemblPlants:AT1G30200.2entrez:839900GeneID:839900
Genevisible:Q9C534Gramene:AT1G30200.1Gramene:AT1G30200.2hmmpanther:PTHR31215hmmpanther:PTHR31215:SF2HOGENOM:HOG000238387InParanoid:Q9C534
IntAct:Q9C534InterPro:IPR001810KEGG:ath:AT1G30200OMA:DEIGVTHPaxDb:Q9C534Pfam:PF12937Pfam:Q9C534
PhylomeDB:Q9C534PIR:B86426PRIDE:Q9C534PRO:PR:Q9C534ProteinModelPortal:Q9C534Proteomes:UP000006548RefSeq:NP_564350.1
RefSeq:NP_973940.1SMR:Q9C534STRING:3702.AT1G30200.1SUPFAM:SSF81383TAIR:AT1G30200UniGene:At.20393UniProt:Q9C534
Coordinates (TAIR10) chr1:+:10625147..10626286
Molecular Weight (calculated) 41844.00 Da
IEP (calculated) 5.26
GRAVY (calculated) -0.04
Length 379 amino acids
Sequence (TAIR10)
(BLAST)
001: MSYLLRSDPV SRIHPEPQSL TSFDHFDLLP DSLLLLIFDK VADVKDLGRC CIVSRRFHSL VPFVENVLVR VDCVISDDDS SSSDENHRFS LNTASISDAG
101: GAGGSFSALF RLVFAPIFKP FQMLGQILGP KRSSSSFDAS FSAINDEIGV THHSPTQVLK NFGEIRFLKI ELPTGELGIE DGILLKWRAD FGSTLDNCMI
201: LGASSVIQSN SVKNHENSVD EDNGNIPESF YTNGGLKLRV VWTISSLIAA SARHYLLQPI INEHKSLDRL VLSDADGQGV LCMNREQLEE LRVTPLSASS
301: ASKRTLVPAL NMRLWYAPEL DLPDGTVLKG ATLVAIRPSE SKKEVCDASW LSDAFEEPFG TVAKMLIKRR TYCLEMNSF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)