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AT1G21910.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Integrase-type DNA-binding superfamily protein
Curator
Summary (TAIR10)
encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.
Computational
Description (TAIR10)
Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G77640.1); Has 6386 Blast hits to 5661 proteins in 267 species: Archae - 0; Bacteria - 0; Metazoa - 99; Fungi - 9; Plants - 5687; Viruses - 2; Other Eukaryotes - 589 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J0ZMeggNOG:ENOG410YX49EMBL:AC013482EMBL:AK176679
EMBL:AY085925EMBL:BT024616EMBL:CP002684EnsemblPlants:AT1G21910
EnsemblPlants:AT1G21910.1entrez:838793Gene3D:3.30.730.10GeneID:838793
Genevisible:Q9SFE4GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0009751GO:GO:0009753GO:GO:0009873GO:GO:0034605
GO:GO:0044212GO:GO:0045893GO:GO:0071497Gramene:AT1G21910.1
hmmpanther:PTHR31985hmmpanther:PTHR31985:SF8HOGENOM:HOG000237624InParanoid:Q9SFE4
InterPro:IPR001471InterPro:IPR016177KEGG:ath:AT1G21910OMA:TKKEMPL
PaxDb:Q9SFE4Pfam:PF00847Pfam:Q9SFE4Pfscan:PS51032
PhylomeDB:Q9SFE4PIR:D86352PRIDE:Q9SFE4PRINTS:PR00367
PRO:PR:Q9SFE4PROSITE:PS51032ProteinModelPortal:Q9SFE4Proteomes:UP000006548
RefSeq:NP_173609.1SMART:SM00380SMR:Q9SFE4STRING:3702.AT1G21910.1
SUPFAM:SSF54171TAIR:AT1G21910tair10-symbols:DREB26UniGene:At.41636
UniProt:Q9SFE4
Coordinates (TAIR10) chr1:+:7696655..7697347
Molecular Weight (calculated) 25477.40 Da
IEP (calculated) 7.76
GRAVY (calculated) -0.66
Length 230 amino acids
Sequence (TAIR10)
(BLAST)
001: MVKQERKIQT SSTKKEMPLS SSPSSSSSSS SSSSSSSCKN KNKKSKIKKY KGVRMRSWGS WVSEIRAPNQ KTRIWLGSYS TAEAAARAYD VALLCLKGPQ
101: ANLNFPTSSS SHHLLDNLLD ENTLLSPKSI QRVAAQAANS FNHFAPTSSA VSSPSDHDHH HDDGMQSLMG SFVDNHVSLM DSTSSWYDDH NGMFLFDNGA
201: PFNYSPQLNS TTMLDEYFYE DADIPLWSFN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)