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AT1G17340.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.992
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Phosphoinositide phosphatase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Phosphoinositide phosphatase family protein; CONTAINS InterPro DOMAIN/s: Synaptojanin, N-terminal (InterPro:IPR002013); BEST Arabidopsis thaliana protein match is: Phosphoinositide phosphatase family protein (TAIR:AT3G14205.1); Has 1726 Blast hits to 1665 proteins in 230 species: Archae - 0; Bacteria - 0; Metazoa - 581; Fungi - 579; Plants - 272; Viruses - 0; Other Eukaryotes - 294 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G17340-MONOMERBioGrid:23545EC:3.1.3.-eggNOG:COG5329eggNOG:KOG1888EMBL:AC007843EMBL:AK229748
EMBL:AY093760EMBL:AY227248EMBL:BT002292EMBL:CP002684EnsemblPlants:AT1G17340EnsemblPlants:AT1G17340.1entrez:838305
GeneID:838305Genevisible:Q8RW97GO:GO:0005774GO:GO:0007033GO:GO:0036092GO:GO:0042578Gramene:AT1G17340.1
hmmpanther:PTHR11200hmmpanther:PTHR11200:SF122HOGENOM:HOG000168063InParanoid:Q8RW97IntAct:Q8RW97InterPro:IPR002013InterPro:IPR030213
iPTMnet:Q8RW97KEGG:00051+3.1.3.-KEGG:00332+3.1.3.-KEGG:00565+3.1.3.-KEGG:00600+3.1.3.-KEGG:00730+3.1.3.-KEGG:00740+3.1.3.-
KEGG:00760+3.1.3.-KEGG:ath:AT1G17340OMA:KAIHFDLPANTHER:PTHR11200:SF122PaxDb:Q8RW97Pfam:PF02383Pfam:Q8RW97
Pfscan:PS50275PhylomeDB:Q8RW97PIR:H86309PRIDE:Q8RW97PRO:PR:Q8RW97PROSITE:PS50275ProteinModelPortal:Q8RW97
Proteomes:UP000006548Reactome:R-ATH-1660514Reactome:R-ATH-1660516Reactome:R-ATH-1660517RefSeq:NP_173177.2SMR:Q8RW97STRING:3702.AT1G17340.1
TAIR:AT1G17340UniGene:At.43908UniProt:Q8RW97
Coordinates (TAIR10) chr1:+:5934129..5938391
Molecular Weight (calculated) 89842.00 Da
IEP (calculated) 8.54
GRAVY (calculated) -0.46
Length 785 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSEPRFEPR PELIDLPVLQ KFKLYATPSN FYLIGRDENK SFRRILKIDR RDQNELNLFE DPTRYTKDEM RELKRRMIVG NEESGGFKAI TTCYGIIGFV
101: RFLEPYYMLL ITKRKKVGEI CGHTVYGIAE SQMIAIPHPS IQSKVAKSEA ELRYKKLLSV VDLSKNFYFS YTYHLMYSLQ KNIGNTERGN PHDNTMFVWN
201: SFLTREIRKI LQNSIWTVAL IYGFFQQTKC SVSGEKFVFT IIARRSRHYA GTRYLRRGVN DIGRVANDVE TEQIVSKVVP AGQKIPITSV VQVRGSIPLF
301: WSQEASVFNP QPEIILNKKD ANYEATQHHF QNLRQRYGNR IIILNLLKTV TGEKKHRETI LRGEFAKTIR FINKGMDREH RLKAIHFDLS KHYKKGADGA
401: FNHLCIFSRK SLELTDLFYC KAPSGVGAEE VIYDSFFNNP IPSQDEEASS PEKEDMKADI FLLQNGVLRT NCIDCLDRTN FAQYAHGLVS LGHQLRTLGI
501: SGPPVVDLNN PLAIELMDAY QKMGNTLAMQ YGGSEAHSKM FCDLRGNWNM VMRQRDIFTA VRRYYSNAYQ DSDKQNAINV FLGHFRPRLG RPALWELDSD
601: QHNIGRSGSN LDIENMRPLI RRSFSDNIIM DCDLNLEELV RENSQPTYEG LNGGVSGTNL EFPFYETEPA SLSFLSVMRN EELMRETGSG QMFQGSSSNS
701: DSHRPNDIPG FSHSYVTKFT PAEDIFERGS SKSVSSDNLF TDRDESVTSL TNTNSSFEFP IMGGSDLLPG FSNAFARWVF SARAW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)