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AT1G14480.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.977
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ankyrin repeat family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT1G14500.1); Has 8895 Blast hits to 5065 proteins in 313 species: Archae - 10; Bacteria - 564; Metazoa - 4493; Fungi - 246; Plants - 1339; Viruses - 29; Other Eukaryotes - 2214 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0666eggNOG:KOG0504EMBL:AC012188EMBL:CP002684
EnsemblPlants:AT1G14480EnsemblPlants:AT1G14480.1entrez:838010ExpressionAtlas:Q9M9R5
Gene3D:1.25.40.20GeneID:838010GO:GO:0016021Gramene:AT1G14480.1
hmmpanther:PTHR24128hmmpanther:PTHR24128:SF24HOGENOM:HOG000131606InterPro:IPR002110
InterPro:IPR020683InterPro:IPR026961OMA:QSENANAPfam:PF00023
Pfam:PF12796Pfam:PF13962Pfscan:PS50297PhylomeDB:Q9M9R5
PIR:F86279PROSITE:PS50297Proteomes:UP000006548RefSeq:NP_172900.2
SMART:SM00248SMR:Q9M9R5STRING:3702.AT1G14480.1SUPFAM:SSF48403
TAIR:AT1G14480TMHMM:TMhelixUniGene:At.41970UniProt:Q9M9R5
Coordinates (TAIR10) chr1:+:4956404..4957888
Molecular Weight (calculated) 49883.50 Da
IEP (calculated) 6.00
GRAVY (calculated) 0.17
Length 441 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLRLQQAAE SGSINELYAL IDENPYILEN IDAVPFVSTP LHVAAVFGNI EFAMEMLNLK PSFARKLNTS GYSPLHLAVE KEQSDFVSHM LWHDGGLSRV
101: KGRNGVTPFH LLVIRGDDDL VAECLITSPE CIEDVNVDRQ NALHLAVMND RFEVLQVLTG WIQRMSQKDA YYIENRVLNK RDFDFNTALH LAAYKNDQQA
201: LKLLLKCRLV EPNLVNIDDL TFVDILRTQG ENAGGGNLDL EQAVIKTGCV EAASMPKFKE ESDLLKSPIN FMTYYSTSMK RMKSSTSDQD RGAFLIVCTL
301: IITATYQMAL QPPGGVHQSE NANANAGSVV MKQTFFILLW ISNTVGFCCA VFYTFCLIPL GQLFTIWFFY IGTCLCISYA LAMAVISPHP LVFLSATFAL
401: FLVFALYLLL EAFVDTWRKH RTVVPKSRFS WFWKVLQYYY I
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)