AT1G13880.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ELM2 domain-containing protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ELM2 domain-containing protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), ELM2 (InterPro:IPR000949); BEST Arabidopsis thaliana protein match is: ELM2 domain-containing protein (TAIR:AT2G03470.2); Has 146 Blast hits to 146 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:4749603..4750967 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 48431.70 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.18 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.75 | ||||||||||||||||||||||||||||
| Length | 424 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGFKRTFDAE DVQELNVKNG RQISYCNKLA KLDEGVPYRL SLEKPGVVGY DISDLYGYKC EDNVDKGFET NAPFSWITTG LSEEDSQSGA TIQSTISHES 101: PESDIPWRPV CSGEEDGYWC PISPRKTVPI GSDYQADIPE CVKEEANDQS GQGVGYDEEQ VTGKCVIPMP DCETEVCKIG KGRKECICLD KGSIRCVQQH 201: IMENREDLFA TIGYDRCLDI GLCEMGEEVA ARLTEDEEDL FHEIVYSNPV SMDRDFWKHL KSAFPSRTMK EIVSYYFNVF ILRRRAIQNR SKSLDVDSDD 301: DEWQVEYDNT FYGAETPSDD KAEKSLSRDE GEEVNANEDS YMSFENQSNA IYSRCPVRNR EESNIGNYWR HCNDLVDQSY SFDPCDSILP DHCWTKNIDL 401: LPTSNIIDEI FGQDHPWDDF SRGK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)