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AT1G13280.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31932409 (2020): plastid
  • PMID:31911558 (2020): mitochondrion
  • PMID:31871212 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30135097 (2018): plastid
  • PMID:29967049 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21841088 (2011): mitochondrion
  • PMID:20061580 (2010): plastid
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16618929 (2006): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : allene oxide cyclase 4
Curator
Summary (TAIR10)
Encodes allene oxide cyclase. One of four genes in Arabidopsis that encode this enzyme, which catalyzes an essential step in jasmonic acid biosynthesis. Gene expression is reduced during senescence, a process that involves jasmonic acid signalling pathway.
Computational
Description (TAIR10)
allene oxide cyclase 4 (AOC4); FUNCTIONS IN: allene-oxide cyclase activity; INVOLVED IN: jasmonic acid biosynthetic process; LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Allene oxide cyclase (InterPro:IPR009410); BEST Arabidopsis thaliana protein match is: allene oxide cyclase 3 (TAIR:AT3G25780.1); Has 204 Blast hits to 204 proteins in 33 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G13280-MONOMERBioGrid:23128BRENDA:5.3.99.6DNASU:837888
EC:5.3.99.6eggNOG:ENOG410IHTAeggNOG:ENOG4111X07EMBL:AC011810
EMBL:AJ308486EMBL:AY057636EMBL:AY141993EMBL:CP002684
EnsemblPlants:AT1G13280EnsemblPlants:AT1G13280.1entrez:837888GeneID:837888
Genevisible:Q93ZC5GO:GO:0005886GO:GO:0009507GO:GO:0009695
GO:GO:0046423Gramene:AT1G13280.1gramene_pathway:5.3.99.6gramene_pathway:PWY-735
gramene_plant_reactome:1119332gramene_plant_reactome:6873863hmmpanther:PTHR31843hmmpanther:PTHR31843:SF2
HOGENOM:HOG000240167InParanoid:Q93ZC5InterPro:IPR009410KEGG:00592+5.3.99.6
KEGG:ath:AT1G13280KO:K10525OMA:EFNEGDRPaxDb:Q93ZC5
Pfam:PF06351Pfam:Q93ZC5PhylomeDB:Q93ZC5PIR:D86267
PRIDE:Q93ZC5PRO:PR:Q93ZC5ProDom:PD329160ProteinModelPortal:Q93ZC5
Proteomes:UP000006548RefSeq:NP_172786.1SMR:Q93ZC5STRING:3702.AT1G13280.1
SUPFAM:SSF141493SwissPalm:Q93ZC5TAIR:AT1G13280tair10-symbols:AOC4
UniGene:At.16133UniProt:Q93ZC5
Coordinates (TAIR10) chr1:+:4547624..4548552
Molecular Weight (calculated) 27810.90 Da
IEP (calculated) 9.39
GRAVY (calculated) -0.29
Length 254 amino acids
Sequence (TAIR10)
(BLAST)
001: MIMASSAAAS ISMITLRNLS RNHQSHQSTF LGFSRSFHNQ RISSNSPGLS TRARSTTSST GGFFRTICSS SSNDYSRPTK IQELNVYEFN EGDRNSPAVL
101: KLGKKPDQLC LGDLVPFTNK LYTGDLTKRI GITAGLCVLI QHVPEKKGDR FEASYSFYFG DYGHISVQGP YLTYEDTFLA ITGGSGVFEG AYGQVKLRQL
201: VYPTKLFYTF YLKGVAADLP VELTGKHVEP SKEVKPAAEA QATQPGATIA NFTN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)