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AT1G07750.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:22430844 (2012): Golgi
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RmlC-like cupins superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RmlC-like cupins superfamily protein; FUNCTIONS IN: copper ion binding, zinc ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), 11-S seed storage protein, plant (InterPro:IPR006044); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT2G28680.1); Has 920 Blast hits to 832 proteins in 102 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 0; Plants - 914; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKJIeggNOG:ENOG410YDMXEMBL:AC007583EMBL:AF334728
EMBL:AF410308EMBL:BT001038EMBL:CP002684EnsemblPlants:AT1G07750
EnsemblPlants:AT1G07750.1entrez:837290Gene3D:2.60.120.10GeneID:837290
GO:GO:0005507GO:GO:0005794GO:GO:0005829GO:GO:0008270
GO:GO:0009506GO:GO:0045735Gramene:AT1G07750.1hmmpanther:PTHR31189
hmmpanther:PTHR31189:SF8InterPro:IPR006044InterPro:IPR006045InterPro:IPR011051
InterPro:IPR014710KEGG:ath:AT1G07750OMA:WDLDENTPfam:PF00190
PhylomeDB:Q9LQQ3PIR:A86213PRINTS:PR00439Proteomes:UP000006548
RefSeq:NP_172255.1SMART:SM00835SMR:Q9LQQ3STRING:3702.AT1G07750.1
SUPFAM:SSF51182TAIR:AT1G07750UniGene:At.22153UniProt:Q9LQQ3
Coordinates (TAIR10) chr1:-:2404300..2405863
Molecular Weight (calculated) 38312.90 Da
IEP (calculated) 6.06
GRAVY (calculated) -0.01
Length 356 amino acids
Sequence (TAIR10)
(BLAST)
001: MELDLTPKLP KKVYGGDGGS YSAWCPEELP MLKQGNIGAA KLALEKNGFA VPRYSDSSKV AYVLQGSGTA GIVLPEKEEK VIAIKQGDSI ALPFGVVTWW
101: FNNEDPELVI LFLGETHKGH KAGQFTEFYL TGTNGIFTGF STEFVGRAWD LDENTVKKLV GSQTGNGIVK LDAGFKMPQP KEENRAGFVL NCLEAPLDVD
201: IKDGGRVVVL NTKNLPLVGE VGFGADLVRI DAHSMCSPGF SCDSALQVTY IVGGSGRVQV VGGDGKRVLE THIKAGSLFI VPRFFVVSKI ADADGMSWFS
301: IVTTPDPIFT HLAGNTSVWK SLSPEVLQAA FKVAPEVEKS FRSTRTSSAI FFPPSN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)