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AT3G17820.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:24872594 (2014): plastid
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:21531424 (2011): plastid
  • PMID:18431481 (2008): plastid
  • PMID:17644812 (2007): plasma membrane
  • PMID:15734919 (2005): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glutamine synthetase 1.3
Curator
Summary (TAIR10)
encodes a cytosolic glutamine synthetase, the enzyme has low affinity with substrate ammonium
Computational
Description (TAIR10)
glutamine synthetase 1.3 (GLN1.3); FUNCTIONS IN: glutamate-ammonia ligase activity, copper ion binding; INVOLVED IN: in 6 processes; LOCATED IN: cytosol, cytosolic ribosome, chloroplast, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine synthetase, catalytic domain (InterPro:IPR008146), Glutamine synthetase, beta-Grasp (InterPro:IPR008147), Glutamine synthetase/guanido kinase, catalytic domain (InterPro:IPR014746); BEST Arabidopsis thaliana protein match is: glutamine synthase clone R1 (TAIR:AT5G37600.1); Has 10255 Blast hits to 10251 proteins in 3319 species: Archae - 147; Bacteria - 5273; Metazoa - 413; Fungi - 249; Plants - 1750; Viruses - 3; Other Eukaryotes - 2420 (source: NCBI BLink).
Protein Annotations
BioGrid:6383BRENDA:6.3.1.2DNASU:821050EC:6.3.1.2
eggNOG:COG0174eggNOG:KOG0683EMBL:AB019230EMBL:AY088312
EMBL:BT004249EMBL:BT020327EMBL:BT020432EMBL:CP002686
EnsemblPlants:AT3G17820EnsemblPlants:AT3G17820.1entrez:821050Gene3D:3.30.590.10
GeneID:821050Genevisible:Q9LVI8GO:GO:0004356GO:GO:0005507
GO:GO:0005524GO:GO:0005829GO:GO:0005886GO:GO:0006542
GO:GO:0009507GO:GO:0022626GO:GO:0042128GO:GO:0046686
Gramene:AT3G17820.1hmmpanther:PTHR20852hmmpanther:PTHR20852:SF62HOGENOM:HOG000061500
InParanoid:Q9LVI8InterPro:IPR008146InterPro:IPR008147InterPro:IPR014746
InterPro:IPR027302InterPro:IPR027303iPTMnet:Q9LVI8KEGG:00220+6.3.1.2
KEGG:00250+6.3.1.2KEGG:00630+6.3.1.2KEGG:00910+6.3.1.2KEGG:ath:AT3G17820
KO:K01915OMA:HASEEVWPaxDb:Q9LVI8Pfam:PF00120
Pfam:PF03951Pfam:Q9LVI8PhylomeDB:Q9LVI8PRIDE:Q9LVI8
PRO:PR:Q9LVI8PROSITE:PS00180PROSITE:PS00181ProteinModelPortal:Q9LVI8
Proteomes:UP000006548Reactome:R-ATH-210455Reactome:R-ATH-70614RefSeq:NP_188409.1
SABIO-RK:Q9LVI8scanprosite:PS00180scanprosite:PS00181SMART:SM01230
SMR:Q9LVI8STRING:3702.AT3G17820.1SUPFAM:SSF54368SUPFAM:SSF55931
TAIR:AT3G17820tair10-symbols:ATGSKB6tair10-symbols:GLN1.3tair10-symbols:GLN1;3
UniGene:At.26821UniProt:Q9LVI8
Coordinates (TAIR10) chr3:+:6097503..6099408
Molecular Weight (calculated) 38596.70 Da
IEP (calculated) 5.93
GRAVY (calculated) -0.41
Length 354 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLLSDLVNL NLTDATGKII AEYIWIGGSG MDIRSKARTL PGPVTDPSKL PKWNYDGSST GQAAGEDSEV ILYPQAIFKD PFRKGNNILV MCDAYTPAGD
101: PIPTNKRHNA AKIFSHPDVA KEEPWYGIEQ EYTLMQKDVN WPIGWPVGGY PGPQGPYYCG VGADKAIGRD IVDAHYKACL YAGIGISGIN GEVMPGQWEF
201: QVGPVEGISS GDQVWVARYL LERITEISGV IVSFDPKPVP GDWNGAGAHC NYSTKTMRND GGLEVIKKAI GKLQLKHKEH IAAYGEGNER RLTGKHETAD
301: INTFSWGVAN RGASVRVGRD TEKEGKGYFE DRRPASNMDP YVVTSMIAET TILG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)