AT1G13000.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.969 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF707) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF707); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT3G26440.2); Has 334 Blast hits to 332 proteins in 29 species: Archae - 0; Bacteria - 19; Metazoa - 0; Fungi - 0; Plants - 306; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:4436402..4438693 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 45852.70 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.63 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.43 | ||||||||||||||||||||||||||||||||
| Length | 401 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MANRTDNSNR CSNGKKPNDG MRLIIATFVG IVVGFFLGIS FPTLSLTKLN FPSGILPSVD ITYVEDETPE TSSETLLHTW SSRGPLHGAN SSDAPHWKIW 101: VPSNPRGAEM LTPGIIAPES DYYLRRLWGL PEEDVPVKPK YLIAFTVGFG QKVNVDACVK KFSKDFTIVL FHYDGRTTEW EELEWSKRAI HVSVPKQTKW 201: WYAKRFLHPD IVAPYDYVFI WDEDLGLENF DVEEYIRLIK KHGLEISQPA VESKKKITWE ITKRKTKGEV HKDAKEKPGR CNDPHLPPCA AFIEIMAPVF 301: SRDAWRCVWH MIQNDLVHGW GLDFALRKCV EPAHEKIGVV DSQWIIHQSL PSLGSQGEAQ DGKAGWQGVR DRCKREWTMF QSRMASSEKQ YLKEIANSTI 401: H |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)