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AT1G12810.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.584
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : proline-rich family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
proline-rich family protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33520.1); Has 20080 Blast hits to 10426 proteins in 614 species: Archae - 4; Bacteria - 1877; Metazoa - 7835; Fungi - 2952; Plants - 4732; Viruses - 459; Other Eukaryotes - 2221 (source: NCBI BLink).
Protein Annotations
EMBL:AY052334EMBL:AY061902EMBL:CP002684EnsemblPlants:AT1G12810
EnsemblPlants:AT1G12810.1entrez:837837ExpressionAtlas:Q940Z6GeneID:837837
Gramene:AT1G12810.1hmmpanther:PTHR31568IntAct:Q940Z6Proteomes:UP000006548
RefSeq:NP_563914.1TAIR:AT1G12810UniGene:At.23978UniGene:At.71229
UniProt:Q940Z6
Coordinates (TAIR10) chr1:+:4367332..4368520
Molecular Weight (calculated) 14203.20 Da
IEP (calculated) 6.35
GRAVY (calculated) -1.01
Length 129 amino acids
Sequence (TAIR10)
(BLAST)
001: MSYDRVPPES YPPPGYQSHY PPPGYPSAPP PPGYPSPPSH HEGYPPPQPY GGYPPPSSRP YEGGYQGYFA GGGYPHQHHG PPPPPPPQNY DHCHHDHHHY
101: QDSDSGCFSF IRGCLAALCC CCLLEECCF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)