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AT1G10170.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NF-X-like 1
Curator
Summary (TAIR10)
Encodes AtNFXL1, a homologue of the putative human transcription repressor NF-X1. Functions as a negative regulator of the trichothecene phytotoxin-induced defense response.
Computational
Description (TAIR10)
NF-X-like 1 (NFXL1); FUNCTIONS IN: zinc ion binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NF-X1-type (InterPro:IPR000967), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors (TAIR:AT5G05660.1); Has 6781 Blast hits to 3735 proteins in 261 species: Archae - 0; Bacteria - 123; Metazoa - 4814; Fungi - 547; Plants - 327; Viruses - 10; Other Eukaryotes - 960 (source: NCBI BLink).
Protein Annotations
EC:6.3.2.-eggNOG:ENOG410XR02eggNOG:KOG1952EMBL:AC005489EMBL:CP002684EnsemblPlants:AT1G10170EnsemblPlants:AT1G10170.1
entrez:837555GeneID:837555Genevisible:Q9SY59GO:GO:0000122GO:GO:0000977GO:GO:0001078GO:GO:0005634
GO:GO:0006366GO:GO:0008270GO:GO:0009642GO:GO:0009651GO:GO:0009697GO:GO:0010188GO:GO:0010310
GO:GO:0016567GO:GO:0016874GO:GO:0042742Gramene:AT1G10170.1hmmpanther:PTHR12360hmmpanther:PTHR12360:SF0HOGENOM:HOG000030687
InParanoid:Q9SY59InterPro:IPR000967InterPro:IPR001841InterPro:IPR019786InterPro:IPR019787KEGG:ath:AT1G10170KO:K12236
ncoils:CoilOMA:CKKKVETPaxDb:Q9SY59Pfam:PF01422Pfam:Q9SY59Pfscan:PS50016Pfscan:PS50089
PhylomeDB:Q9SY59PIR:D86236PRIDE:Q9SY59PRO:PR:Q9SY59PROSITE:PS01359PROSITE:PS50016PROSITE:PS50089
ProteinModelPortal:Q9SY59Proteomes:UP000006548RefSeq:NP_172488.1scanprosite:PS01359SMART:SM00438STRING:3702.AT1G10170.1SUPFAM:SSF57850
TAIR:AT1G10170tair10-symbols:ATNFXL1tair10-symbols:NFXL1UniGene:At.25390UniPathway:UPA00143UniProt:Q9SY59
Coordinates (TAIR10) chr1:-:3333925..3337491
Molecular Weight (calculated) 130723.00 Da
IEP (calculated) 8.12
GRAVY (calculated) -0.60
Length 1188 amino acids
Sequence (TAIR10)
(BLAST)
0001: MSFQVRRDRS DDRSHRFNHQ QTWIPRNSST SSVVVNEPLL PPNTDRNSET LDAGSASRPV YLQRQHNASG PPSYNHHQRS SNIGPPPPNQ HRRYNAPDNQ
0101: HQRSDNIGPP QPNQHRRYNA PDNQHQRSDN SGPPQPYRHR RNNAPENQHQ RSDNIGPPPP NRQRRNNASG TLPDNRQRVA SRTRPVNQGK RVAKEENVVL
0201: TDPNLPQLVQ ELQEKLVKSS IECMICYDKV GRSANIWSCS SCYSIFHINC IKRWARAPTS VDLLAEKNQG DNWRCPGCQS VQLTSSKEIS YRCFCGKRRD
0301: PPSDPYLTPH SCGEPCGKPL EKEFAPAETT EEDLCPHVCV LQCHPGPCPP CKAFAPPRSC PCGKKMVTTR CSERRSDLVC GQRCDKLLSC GRHQCERTCH
0401: VGPCDPCQVL VNATCFCKKK VETVICGDMN VKGELKAEDG VYSCSFNCGK PLGCGNHFCS EVCHPGPCGD CDLLPSRVKT CYCGNTRLEE QIRQSCLDPI
0501: PSCSNVCRKL LPCRLHTCNE MCHAGDCPPC LVQVNQKCRC GSTSRAVECY ITTSSEAEKF VCAKPCGRKK NCGRHRCSER CCPLLNGKKN DLSGDWDPHV
0601: CQIPCQKKLR CGQHSCESLC HSGHCPPCLE MIFTDLTCAC GRTSIPPPLS CGTPVPSCQL PCPIPQPCGH SDTHGCHFGD CPPCSTPVEK KCVGGHVVLR
0701: NIPCGLKDIR CTKICGKTRR CGMHACARTC HPEPCDSFNE SEAGMRVTCR QKCGAPRTDC RHTCAALCHP SAPCPDLRCE FSVTITCSCG RITATVPCDA
0801: GGRSANGSNV YCAAYDEASV LQKLPAPLQP VESSGNRIPL GQRKLSCDDE CAKLERKRVL QDAFDITPPN LEALHFSENS AMTEIISDLY RRDPKWVLAV
0901: EERCKFLVLG KARGSTSALK VHIFCPMQKD KRDTVRLIAE RWKLGVSNAG WEPKRFTVVH VTAKSKPPTR IIGARGGAIS IGGPHPPFYD SLVDMDPGLV
1001: VSFLDLPREA NISALVLRFG GECELVWLND KNALAVFHDH ARAATAMRRL EHGSVYHGAV VVQSGGQSPS LNNVWGKLPG SSAWDVDKGN PWRRAVIQES
1101: DDSWGAEDSP IGGSSTDAQA SALRSAKSNS PIVTSVNRWS VLEPKKASTS TLEPIAQIEE SSSSKTTGKQ PVEGSGEEVV DDWEKVCE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)