AT1G08680.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.992 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ARF GAP-like zinc finger-containing protein ZIGA4 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD14 belongs to the class 4, together with AGD15. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ARF GAP-like zinc finger-containing protein ZIGA4 (ZIGA4); FUNCTIONS IN: ARF GTPase activator activity, DNA binding, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: NSP (nuclear shuttle protein)-interacting GTPase (TAIR:AT4G13350.2); Has 3488 Blast hits to 2959 proteins in 240 species: Archae - 0; Bacteria - 4; Metazoa - 1486; Fungi - 545; Plants - 477; Viruses - 2; Other Eukaryotes - 974 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:2762820..2768387 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 71348.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.36 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.72 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 649 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMGSKREEER NEKIIRGLMK LPPNRRCINC NSLGPQYVCT TFWTFVCMAC SGIHREFTHR VKSVSMSKFT SKEVEVLQNG GNQRAREIYL KNWDHQRQRL 101: PENSNAERVR EFIKNVYVQK KYAGANDADK PSKDSQDHVS SEDMTRRANS YHSYSQSPPY DYQYEERRYG KIPLGFTGKS ASVKGLHAKA SSFVYSPGRF 201: SDHMFEDQFS NEDSAPRASD YSVSSAGDPF RSDIQSPNFQ QEAEFRSPQF QHSNAPPSEN LFPGRQHQRT TSSGSVRSVD SNFMSIKSYT SGGLGEAVSE 301: SRQNTGSQQG KTSNHVPLVA ESTKAPIDLF QLPGAPVAQS VDTFQPSIAP RSPPVNLQQA PQTYSFTPAN SFAGNLGQQP TSRPSELSAP KNEGWASFDN 401: PMPAAKSTNV ITSPGDFQLE LKIEEILQPS TSMQLPPYPS TVDQHALSIP SPWQEDLSNV LKDVVDNPQP WNAFPDSIEA NPLDSSRNIH QQVDGASTSS 501: YNTDHQHLES QVLEELSNDG TQTTRIPAGS SAFGFPGNIG MAPSYSEEAW QHVNEQKSAN PFDLPYDSEF DSNDMFLDMS SLQGALPDIQ TPQAFLNGVS 601: QPWLAADSVP SYLPAPAVAQ GGLAYMAGQA STNSAAQGPV AFTGGNPFA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)