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AT1G07350.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: RNA splicing; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G35785.1); Has 998067 Blast hits to 992400 proteins in 35925 species: Archae - 21556; Bacteria - 596698; Metazoa - 207042; Fungi - 24534; Plants - 55970; Viruses - 68919; Other Eukaryotes - 23348 (source: NCBI BLink).
Protein Annotations
BioGrid:22487eggNOG:ENOG4111F1GeggNOG:KOG4661EMBL:AC022464EMBL:AY050800EMBL:AY053418EMBL:BT005797
EMBL:CP002684EnsemblPlants:AT1G07350EnsemblPlants:AT1G07350.1EnsemblPlants:AT1G07350.2entrez:837246ExpressionAtlas:Q84TH4Gene3D:3.30.70.330
GeneID:837246Genevisible:Q84TH4GO:GO:0000166GO:GO:0003676GO:GO:0005681GO:GO:0006397GO:GO:0008380
GO:GO:0009644GO:GO:0016607GO:GO:0043484hmmpanther:PTHR15241hmmpanther:PTHR15241:SF4HOGENOM:HOG000239942InParanoid:Q84TH4
InterPro:IPR000504InterPro:IPR012677iPTMnet:Q84TH4KEGG:ath:AT1G07350OMA:YSPVERDPaxDb:Q84TH4Pfam:PF00076
Pfam:Q84TH4Pfscan:PS50102PRIDE:Q84TH4PRO:PR:Q84TH4PROSITE:PS50102ProteinModelPortal:Q84TH4Proteomes:UP000006548
Reactome:R-ATH-72163RefSeq:NP_563787.2RefSeq:NP_849605.1SMART:SM00360SMR:Q84TH4STRING:3702.AT1G07350.1SUPFAM:SSF54928
TAIR:AT1G07350UniGene:At.24511UniProt:Q84TH4
Coordinates (TAIR10) chr1:-:2257732..2260101
Molecular Weight (calculated) 44980.40 Da
IEP (calculated) 12.05
GRAVY (calculated) -1.47
Length 382 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKREIHFTP VGRQVQRVLE YPLRLENRSP MSYSRRSRYS PSLSPYDKRR GRSVSRSLSR SPTRSVSSDA ENPGNSLYVT GLSHRVTERD LEDHFAKEGK
101: VTDVHLVLDP WTRESRGFGF ISMKSVGDAN RCIRSLDHSV LQGRVITVEK ARRRRGRTPT PGKYLGLRTA RGRHKSPSYS PRRSVSCSRS RSRSYSSDRG
201: RSYSPSYGRR GRSSSYSPFY RRRRFYSPSR SPSPDDRYNR RRDRSYSPYY RRRDRSRSYS RNCRARDRSP YYMRRYRSRS RSYSPRYRAR DRSCSPYYRG
301: RDRSYSPHYQ GRDRSYSPES RYYRRHRSVS GSVSPGGRSM SRSISPRKGR KESRSKSRRH DRQSSMCHSR SARSSTSRSV SP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)