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AT1G06800.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : alpha/beta-Hydrolases superfamily protein
Curator
Summary (TAIR10)
Encodes a lipase that hydrolyzes phosphatidylcholine, glycolipids as well as triacylglycerols.
Computational
Description (TAIR10)
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: galactolipase activity, triglyceride lipase activity, phospholipase A1 activity; INVOLVED IN: lipid metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G30550.2); Has 1444 Blast hits to 1435 proteins in 292 species: Archae - 0; Bacteria - 280; Metazoa - 45; Fungi - 276; Plants - 599; Viruses - 3; Other Eukaryotes - 241 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G06800-MONOMERBioCyc:ARA:GQT-771-MONOMEREC:3.1.1.-eggNOG:ENOG410IQ35eggNOG:ENOG410XP1IEMBL:AC011001EMBL:AY052199
EMBL:AY099599EMBL:BT002718EMBL:CP002684EnsemblPlants:AT1G06800EnsemblPlants:AT1G06800.1entrez:837191ESTHER:arath-PLA15
ExpressionAtlas:Q941F1Gene3D:3.40.50.1820GeneID:837191Genevisible:Q941F1GO:GO:0004806GO:GO:0008970GO:GO:0009507
GO:GO:0016042GO:GO:0047714gramene_pathway:3.1.1.3gramene_pathway:3.1.1.32gramene_pathway:LIPAS-PWYgramene_pathway:LIPASYN-PWYhmmpanther:PTHR31403
hmmpanther:PTHR31403:SF7HOGENOM:HOG000238127InParanoid:Q941F1InterPro:IPR002921InterPro:IPR029058KEGG:ath:AT1G06800OMA:GYHGRGE
PaxDb:Q941F1Pfam:PF01764Pfam:Q941F1PhylomeDB:Q941F1PIR:H86202PRIDE:Q941F1PRO:PR:Q941F1
PROSITE:PS00120ProteinModelPortal:Q941F1Proteomes:UP000006548RefSeq:NP_563772.1RefSeq:NP_849603.1SMR:Q941F1STRING:3702.AT1G06800.1
SUPFAM:SSF53474TAIR:AT1G06800tair10-symbols:PLA-I{gamma}1UniGene:At.26438UniGene:At.48160UniGene:At.51507UniProt:Q941F1
Coordinates (TAIR10) chr1:-:2089538..2091443
Molecular Weight (calculated) 58448.30 Da
IEP (calculated) 8.77
GRAVY (calculated) -0.52
Length 515 amino acids
Sequence (TAIR10)
(BLAST)
001: MATIPSHNLR PHTTNQRTQY SLSFRPHFSR STLITFPARS SPARAMSRTD EEASISTRLE QESYGLTTAE DIRRRDGEAK ESKRLRDTWR KIQGEDDWAG
101: LMDPMDPVLR SELIRYGEMA QACYDAFDFD PFSRYCGSCR FTRRHLFDSL GIIDSGYEVA RYLYATSNIN LPNFFSKSRW SKVWSKNANW MGYVAVSDDN
201: EATRCRLGRR DIAIAWRGTV TRLEWIADLK DFLKPVSGNG FRCPDPAVKA ESGFLDLYTD KDTSCNFSKF SAREQVLTEV KRLVERYGDE EGEELSITVT
301: GHSLGGALAV LSAYDVAEMG VNRTRKGKVI PVTAFTYGGP RVGNIRFKER IEKLGVKVLR VVNEHDVVAK SPGLFLNERA PQALMKLAGG LPWCYSHVGE
401: MLPLDHQKSP FLKPTVDLST AHNLEALLHL LDGYHGKGQR FVLSSGRDPA LVNKASDFLK DHFMVPPYWR QDANKGMVRN TDGRWIQPDR IRADDQHAPD
501: IHQLLTQLHH PSQLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)