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AT5G18490.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.852
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant protein of unknown function (DUF946)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant protein of unknown function (DUF946); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF946 (InterPro:IPR009291); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF946) (TAIR:AT3G04350.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHBVeggNOG:ENOG41123CAEMBL:AY054512EMBL:BT008904
EMBL:CP002688EnsemblPlants:AT5G18490EnsemblPlants:AT5G18490.1entrez:831967
GeneID:831967Gramene:AT5G18490.1hmmpanther:PTHR17204hmmpanther:PTHR17204:SF30
InterPro:IPR009291KEGG:ath:AT5G18490OMA:CDCFYWNPfam:PF06101
PhylomeDB:Q940K1Proteomes:UP000006548RefSeq:NP_197350.1STRING:3702.AT5G18490.1
TAIR:AT5G18490UniGene:At.26472UniProt:Q940K1
Coordinates (TAIR10) chr5:-:6134275..6136554
Molecular Weight (calculated) 61648.90 Da
IEP (calculated) 5.36
GRAVY (calculated) -0.34
Length 553 amino acids
Sequence (TAIR10)
(BLAST)
001: MFCDCFYWNK GFSELESESS ESKPFSLPSP LPQWPQGRGF ATGRISLGEI QVVKVTEFDR VWKCGTSRGK LRCASFYKPV GIPEGFHCLG HYCQPNNQPL
101: RGFVLAARAN KPGHLADDHR PPLKKPLNYS LVWSSDSDCY FWLPNPPVGY RAVGVIVTDG SEEPEVDEVR CVREDLTESC ETGEKVLGVG SFNVWSTKPC
201: ERGIWSRGVE VGSFVCSTND LSSDNKAAMN IACLKNLDPS LQGMPNLDQV HALIHHYGPM VYFHPEETYM PSSVPWFFKN GALLHRFGKS QGEPINSAGS
301: NLPAGGENDG SFWIDLPEDE EVRSNLKKGN IESSELYVHV KPALGGIFTD VVMWIFCPFN GPATLKIGLL TVPMNRLGEH VGDWEHFTFR ISNFNGDLTQ
401: MFFSQHSGGG WVDVSDLEFV KGSNKPVVYS SKHGHASFPH PGMYLQGPSK LGIGVRNDVA KSKYMVDSSQ RYRIVAAEYL GEGAVSEPYW LQFMREWGPT
501: IVYDSAAEIN KIIDLLPLIL RNSFESLFPI ELYGEEGPTG PKEKDNWEGD EIC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)