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AT1G06720.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: ribosome biogenesis; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AARP2CN (InterPro:IPR012948), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Protein of unknown function DUF663 (InterPro:IPR007034); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G42440.1); Has 8329 Blast hits to 5822 proteins in 470 species: Archae - 49; Bacteria - 737; Metazoa - 2493; Fungi - 1253; Plants - 549; Viruses - 77; Other Eukaryotes - 3171 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5192eggNOG:KOG1951EMBL:CP002684EnsemblPlants:AT1G06720EnsemblPlants:AT1G06720.1entrez:837182Gene3D:3.40.50.300
GeneID:837182GO:GO:0005634GO:GO:0042254Gramene:AT1G06720.1hmmpanther:PTHR12858hmmpanther:PTHR12858:SF2InParanoid:F4IDR3
InterPro:IPR007034InterPro:IPR012948InterPro:IPR027417InterPro:IPR030387iPTMnet:F4IDR3KEGG:ath:AT1G06720KO:K14569
ncoils:CoilOMA:WQGMKTVPaxDb:F4IDR3Pfam:PF04950Pfam:PF08142Pfscan:PS51714PRIDE:F4IDR3
PROSITE:PS51714ProteinModelPortal:F4IDR3Proteomes:UP000006548RefSeq:NP_172157.1SMART:SM00785SMART:SM01362STRING:3702.AT1G06720.1
SUPFAM:SSF52540TAIR:AT1G06720UniGene:At.12092UniProt:F4IDR3
Coordinates (TAIR10) chr1:-:2060615..2067281
Molecular Weight (calculated) 131192.00 Da
IEP (calculated) 7.98
GRAVY (calculated) -0.86
Length 1147 amino acids
Sequence (TAIR10)
(BLAST)
0001: MAADELMPSH RSHRTPKSGP TARKKSELDK KKRGISVDKQ KNLKAFGVKS VVHAKKAKHH AAEKEQKRLH LPKIDRNYGE APPFVVVVQG PPGVGKSLVI
0101: KSLVKEFTKQ NVPEVRGPIT IVQGKQRRFQ FVECPNDINA MVDCAKVADL ALLVVDGSYG FEMETFEFLN IMQVHGFPRV MGVLTHLDKF NDVKKLRKTK
0201: HHLKHRFWTE IYHGAKLFYL SGLIHGKYTP REVHNLARFV IVIKPQPLTW RTAHPYVLVD RLEDVTPPEK VQMDKKCDRN ITVFGYLRGC NFKKRMKVHI
0301: AGVGDFIVAG VTALTDPCPL PSAGKKKGLR DRDKLFYAPM SGIGDLVYDK DAVYININSH QVQYSKTDDG KGEPTNKGKG RDVGEDLVKS LQNTKYSVDE
0401: KLDKTFINFF GKKTSASSET KLKAEDAYHS LPEGSDSESQ SGDDEEDIVG NESEMKQETE IHGGRLRRKA IFKTDLNEDD FEEADDLELD SYDPDTYDFE
0501: EADDAESDDN EVEDGGDDSA SDSADGEPGD YQIDDKDSGN ISQWKAPLKE IARKKNPNLM QIVYGASSLA TPLINENHDI SDDDESDDED FFKPKGEQHK
0601: NLGGGLDVGY VNSEDCSKFV NYGYLKNWKE KEVCESIRDR FTTGDWSKAA LRDKNLGTGG EGEDDELYGD FEDLETGEKH KSHENLESGA NENEDEDAEV
0701: VERDGNNPRS QADEPGYADK LKEAQEITKQ RNELEYNDLD EETRIELAGF RTGTYLRLEI HNVPYEMVEF FDPCHPILVG GIGFGEDNVG YMQARLKKHR
0801: WHKKVLKTRD PIIVSIGWRR YQTIPVFAIE DRNGRHRMLK YTPEHMHCLA SFWGPLVPPN TGFVAFQNLS NNQAGFRITA TSVVLEFNHQ ARIVKKIKLV
0901: GTPCKIKKKT AFIKDMFTSD LEIARFEGSS VRTVSGIRGQ VKKAGKNMLD NKAEEGIARC TFEDQIHMSD MVFLRAWTTV EVPQFYNPLT TALQPRDKTW
1001: NGMKTFGELR RELNIPIPVN KDSLYKAIER KQKKFNPLQI PKRLEKDLPF MSKPKNIPKR KRPSLEDKRA VIMEPKERKE HTIIQQFQLL QHHTMKKKKA
1101: TDQKKRKEYE AEKAKNEEIN KKRRREERRD RYREEDKQKK KTRRSLD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)