AT5G67130.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.987 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : PLC-like phosphodiesterases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
PLC-like phosphodiesterases superfamily protein; FUNCTIONS IN: phospholipase C activity, phosphoric diester hydrolase activity; INVOLVED IN: intracellular signaling pathway, lipid metabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphatidylinositol-specific , X domain (InterPro:IPR000909), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946); BEST Arabidopsis thaliana protein match is: PLC-like phosphodiesterases superfamily protein (TAIR:AT1G49740.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:26791599..26793649 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 46609.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.03 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.05 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 426 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSACINGLCR AVTVSLLLLL LSFSFSSACS NGNCQLLDSC SSATDCVSGL YCGDCPAVGR SKPVCTRGQA TSPTSIINGL PFNKYTWLMT HNAFSNANAP 101: LLPGVERITF YNQEDTITNQ LQNGVRGLML DMYDFNNDIW LCHSLRGQCF NFTAFQPAIN ILREVEAFLS QNPTEIVTII IEDYVHRPKG LSTLFANAGL 201: DKYWFPVSKM PRKGEDWPTV TDMVQENHRL LVFTSVAAKE DEEGVAYQWR YMVENESGDP GVKRGSCPNR KESQPLNSKS SSLFLMNYFP TYPVEKDACK 301: EHSAPLAEMV GTCLKSGGNR MPNFLAVNFY MRSDGGGVFE ILDRMNGPVL CGCETLSACQ PGAAYGSCKN VTVQTRTPSM DSTAGSNSGG SYSGSVQFSR 401: SLASVAQLNN IVVFCFSLLP LLIFLL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)