AT1G08210.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Eukaryotic aspartyl protease family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: anchored to membrane, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT5G22850.1); Has 5025 Blast hits to 5004 proteins in 412 species: Archae - 0; Bacteria - 0; Metazoa - 1724; Fungi - 965; Plants - 2068; Viruses - 0; Other Eukaryotes - 268 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:2577119..2580581 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52991.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.97 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.14 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 492 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAVDSPAGVI IIAAVLLLAA TTLACGSDAV LKLERLIPPN HELGLTELRA FDSARHGRLL QSPVGGVVNF PVDGASDPFL VGLYYTKVKL GTPPREFNVQ 101: IDTGSDVLWV SCTSCNGCPK TSELQIQLSF FDPGVSSSAS LVSCSDRRCY SNFQTESGCS PNNLCSYSFK YGDGSGTSGY YISDFMSFDT VITSTLAINS 201: SAPFVFGCSN LQSGDLQRPR RAVDGIFGLG QGSLSVISQL AVQGLAPRVF SHCLKGDKSG GGIMVLGQIK RPDTVYTPLV PSQPHYNVNL QSIAVNGQIL 301: PIDPSVFTIA TGDGTIIDTG TTLAYLPDEA YSPFIQAVAN AVSQYGRPIT YESYQCFEIT AGDVDVFPQV SLSFAGGASM VLGPRAYLQI FSSSGSSIWC 401: IGFQRMSHRR ITILGDLVLK DKVVVYDLVR QRIGWAEYDC SLEVNVSASR GGRSKDVINT GQWRESGSES FNRSYYLLQL VVFLVHLFAR FL |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)