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AT1G08210.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:16287169 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Eukaryotic aspartyl protease family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: anchored to membrane, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT5G22850.1); Has 5025 Blast hits to 5004 proteins in 412 species: Archae - 0; Bacteria - 0; Metazoa - 1724; Fungi - 965; Plants - 2068; Viruses - 0; Other Eukaryotes - 268 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G08210-MONOMEReggNOG:ENOG410XNV7eggNOG:KOG1339EMBL:AF329505
EMBL:AY092970EMBL:AY128724EMBL:CP002684EnsemblPlants:AT1G08210
EnsemblPlants:AT1G08210.1entrez:837342Gene3D:2.40.70.10GeneID:837342
GO:GO:0004190GO:GO:0009505GO:GO:0031225Gramene:AT1G08210.1
hmmpanther:PTHR13683hmmpanther:PTHR13683:SF348HOGENOM:HOG000006100InterPro:IPR001461
InterPro:IPR021109InterPro:IPR032799InterPro:IPR032861InterPro:IPR033121
KEGG:ath:AT1G08210MEROPS:A01.A35OMA:NFQTESGPANTHER:PTHR13683
Pfam:PF00026Pfam:PF14541Pfam:PF14543Pfscan:PS51767
PhylomeDB:Q9FPD6PRINTS:PR00792PROSITE:PS51767Proteomes:UP000006548
RefSeq:NP_563808.1SMR:Q9FPD6STRING:3702.AT1G08210.1SUPFAM:SSF50630
TAIR:AT1G08210TMHMM:TMhelixUniGene:At.18932UniProt:Q9FPD6
Coordinates (TAIR10) chr1:-:2577119..2580581
Molecular Weight (calculated) 52991.20 Da
IEP (calculated) 5.97
GRAVY (calculated) 0.14
Length 492 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVDSPAGVI IIAAVLLLAA TTLACGSDAV LKLERLIPPN HELGLTELRA FDSARHGRLL QSPVGGVVNF PVDGASDPFL VGLYYTKVKL GTPPREFNVQ
101: IDTGSDVLWV SCTSCNGCPK TSELQIQLSF FDPGVSSSAS LVSCSDRRCY SNFQTESGCS PNNLCSYSFK YGDGSGTSGY YISDFMSFDT VITSTLAINS
201: SAPFVFGCSN LQSGDLQRPR RAVDGIFGLG QGSLSVISQL AVQGLAPRVF SHCLKGDKSG GGIMVLGQIK RPDTVYTPLV PSQPHYNVNL QSIAVNGQIL
301: PIDPSVFTIA TGDGTIIDTG TTLAYLPDEA YSPFIQAVAN AVSQYGRPIT YESYQCFEIT AGDVDVFPQV SLSFAGGASM VLGPRAYLQI FSSSGSSIWC
401: IGFQRMSHRR ITILGDLVLK DKVVVYDLVR QRIGWAEYDC SLEVNVSASR GGRSKDVINT GQWRESGSES FNRSYYLLQL VVFLVHLFAR FL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)