AT5G65490.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SGT1 (InterPro:IPR010770); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:26178003..26180309 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 73165.10 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.57 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.72 | ||||||||||||||||||||||||||||||||||||
| Length | 643 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSKPSSSPFF SETTSRLQDE TVFFSLFPDS SLSSAALQSL HLEIIDFVSP FTSPYIWQHE PFSLSIALSS SCACTNTAIP HLHGKLKYGD NLEDEWFAVF 101: LLFRISAAFP SNSIRVWDTD GEFLLIEAAF HLPRWLNPET SLNRVFIRGG DLHIVPRSRL PDPSLVASLR FLIERGNESR ASDSVQSALK NRISDYPERA 201: WRNMHRVRVR VPVSVAQVIR HEPFLISLAV EGFYDRDMDS MKHAAKMEKF LSKGREEKLV LVLVKMSRAM YGQLVQQKFQ APNCYPMPSV SDRDAFSEAE 301: LGMKIACGME MMYQQRKKEG EDGKGISWSK YKDNLEKYGY FEGLLSGSKE YKRLMENAEE YHQKSSSFSR TRDIMSAPVR RIDEILALPY SEDDFKGQEV 401: PASDNDSWLY DGEDELNSVL QERQKEMEFY NSKKERKNKG KEKQEAGSSS DANMNNFDLG DISKSMQQFM HKVSSYKGAE VPENRDFKEV SIDVDRFMKD 501: IESMLGSQGR DEQADDDSDG SEGSSMDMDF DDVEDDSEGE ESNEDAKESF EESYYGAMNE ELKNSTLEKS FENVNQQHSS KQNEESSKTR DEKDDEFTPV 601: DADFNLVKNL LESYSSQQGL PGPASNLLGL MGLQLPKDSG DKN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)