AT5G63640.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ENTH/VHS/GAT family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ENTH/VHS/GAT family protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, intra-Golgi vesicle-mediated transport; LOCATED IN: Golgi stack, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: VHS (InterPro:IPR002014), GAT (InterPro:IPR004152), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: ENTH/VHS/GAT family protein (TAIR:AT4G32760.1); Has 1276 Blast hits to 1268 proteins in 185 species: Archae - 0; Bacteria - 4; Metazoa - 656; Fungi - 270; Plants - 272; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:25478935..25481221 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49425.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.69 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.68 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 447 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAAELVSSAT SEKLADVDWA KNIEICELAA RDERQAKDVI KAIKKRLGSK NPNTQLYAVQ LLEMLMNNIG ENIHKQVIDT GVLPTLVKIV KKKSDLPVRE 101: RIFLLLDATQ TSLGGASGKF PQYYTAYYEL VNAGVKFTQR PNATPVVVTA QAVPRNTLNE QLASARNEGP ATTQQRESQS VSPSSILQKA STALEILKEV 201: LDAVDSQNPE GAKDEFTLDL VEQCSFQKER VMHLVMTSRD EKAVSKAIEL NEQLQRILNR HEDLLSGRIT VPSRSTTSNG YHSNLEPVRP ISNGDQKREL 301: KASNANTESS SFISNRAHLK LEEEDEEEEP EQLFRRLRKG KARARPEDEE EPSPPQGLPG SAIHNERLNR PLIRPLPSEE ASRGGDSHSQ SPPVVIPPPP 401: AKHVEREKFF KENKGDGALG LPGHMRGLSL HSRDGSSSRS GSVDFSD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)