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AT5G62900.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G50090.1); Has 157 Blast hits to 157 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 157; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXPDeggNOG:ENOG41123BVEMBL:AB009053EMBL:AF370174
EMBL:AY133849EMBL:CP002688EnsemblPlants:AT5G62900EnsemblPlants:AT5G62900.1
entrez:836410GeneID:836410Gramene:AT5G62900.1hmmpanther:PTHR33413
hmmpanther:PTHR33413:SF5HOGENOM:HOG000242807InterPro:IPR025322KEGG:ath:AT5G62900
OMA:CTVNASEPfam:PF14009PhylomeDB:Q9FM06Proteomes:UP000006548
RefSeq:NP_201095.1TAIR:AT5G62900UniGene:At.8486UniProt:Q9FM06
Coordinates (TAIR10) chr5:+:25248872..25249725
Molecular Weight (calculated) 17631.20 Da
IEP (calculated) 10.43
GRAVY (calculated) -0.49
Length 161 amino acids
Sequence (TAIR10)
(BLAST)
001: MGNCQAAEAA TTVIQQPDGK SVRFYCTVNA SEVIKSHPGH HVALLLSSAV PHGGSLRVTR IKLLRPSDNL LLGHVYRLIS SEEVMKGIRA KKSGKMKKIH
101: GEFSVAEEEI NPLTLRSESA SDKDTQRRIH EKQRGMMNTG GATNKVRAWQ PSLQSISEST S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)