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AT5G40720.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Domain of unknown function (DUF23)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF23 (InterPro:IPR008166); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G27330.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0463eggNOG:ENOG410IIWMEMBL:AB009052EMBL:CP002688
EMBL:KJ138654EnsemblPlants:AT5G40720EnsemblPlants:AT5G40720.1entrez:834072
GeneID:834072GO:GO:0016021GO:GO:0016740Gramene:AT5G40720.1
hmmpanther:PTHR21461hmmpanther:PTHR21461:SF10InterPro:IPR008166InterPro:IPR029044
KEGG:ath:AT5G40720OMA:MYHTRIGPfam:PF01697PhylomeDB:Q9FM26
Proteomes:UP000006548RefSeq:NP_198888.1STRING:3702.AT5G40720.1SUPFAM:SSF53448
TAIR:AT5G40720TMHMM:TMhelixUniGene:At.7426UniProt:Q9FM26
Coordinates (TAIR10) chr5:+:16298063..16299893
Molecular Weight (calculated) 66973.30 Da
IEP (calculated) 9.89
GRAVY (calculated) -0.30
Length 583 amino acids
Sequence (TAIR10)
(BLAST)
001: MKNRRKRGGL SSVDVVVSWR RFFRFVSLFV FSFVLFSAFF IFLGKIRPVV RSSVNAVLRG SVPVVKVITI HEAVEFPDQT LIFLKYPPSS RFFTKEDLFC
101: VFSDVNDSSK LFKELPFAVE TDDYGRQIVR CSAVPRGNTV SLAVSRWRVD DYNLQVGLTH RWDWLVYDAV IDDDNSTVVF VKGLNLRPGK VADASRYECV
201: YGWDFTKPKL LLRAQAISAA QEIVRCKTPL TVLDGPRRAQ SQPVKVSVRI KGSGMLPSVA HPIKRPGRIK VSKTFETCVC TMTRNAANVL REWVMYHAGI
301: GVQRWFIYDN NSDDDIVSEI KNLENRGYNI SRHFWPWIKT QEAGFANCAI RAKSDCDWVA FIDVDEFFYI PSGQTLTNVI RNHTTTPSSS GEIGEIRTPC
401: HSFGPSGLRD PPRSGVTAAY TCRMALPERH KSIIRPESLN ATLINVVHHF HLKEEFAFVD VDKSTMVINH YKYQVWDIFK EKFKRRVATY VADWQNEENV
501: GSKDRAPGLG TRPVEPTDWA ERFCEVSDIG LRDWVLEKFS DRKTQRLVWE REARRVEDEV IVQMGSWADK RVGRKRKKQL KAQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)